YRC Public Data Repository - Protein Structure Prediction

Protein:	YHIQ_ECOLI
Organism:	Escherichia coli
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHIQ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|84386286, gi\|... - gi\|84386286\|ref\|ZP_00989314.1\| hypothetical protein V12B01_02215 [Vibrio splendidus 12B01], gi\|84378...	230.0	[0..1]	[250..1]
gi\|86146615, gi\|... - gi\|86146615\|ref\|ZP_01064937.1\| hypothetical protein MED222_18463 [Vibrio sp. MED222], gi\|85835672\|gb...	228.0	[0..1]	[250..1]
RSMJ_SHELP - Ribosomal RNA small subunit methyltransferase J OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) ...	228.0	[0..16]	[250..22]
gi\|91224909, gi\|... - gi\|91224909\|ref\|ZP_01260168.1\| hypothetical protein V12G01_10823 [Vibrio alginolyticus 12G01], gi\|91...	227.0	[0..1]	[250..1]
gi\|116185688, gi... - gi\|75856449\|ref\|ZP_00764077.1\| COG0500: SAM-dependent methyltransferases [Vibrio sp. Ex25], gi\|11618...	226.0	[0..1]	[250..1]
RSMJ_VIBPA - Ribosomal RNA small subunit methyltransferase J OS=Vibrio parahaemolyticus serotype O3:K6 (strain RI... Y073_VIBPA, RSMJ... - UPF0341 protein VP0073 OS=Vibrio parahaemolyticus GN=VP0073 PE=3 SV=1, Ribosomal RNA small subunit m...	225.0	[0..1]	[250..1]
RSMJ_SHESM - Ribosomal RNA small subunit methyltransferase J OS=Shewanella sp. (strain MR-4) GN=rsmJ PE=3 SV=1	220.0	[0..16]	[250..26]
RSMJ_SHESR - Ribosomal RNA small subunit methyltransferase J OS=Shewanella sp. (strain MR-7) GN=rsmJ PE=3 SV=1	220.0	[0..16]	[250..26]
RSMJ_PSYIN - Ribosomal RNA small subunit methyltransferase J OS=Psychromonas ingrahamii (strain 37) GN=rsmJ PE=3 ...	219.0	[0..1]	[250..1]
RSMJ_SHESA - Ribosomal RNA small subunit methyltransferase J OS=Shewanella sp. (strain ANA-3) GN=rsmJ PE=3 SV=1	219.0	[0..16]	[250..26]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKICLIDETG TGDGALSVLA ARWGLEHDED NLMALVLTPE HLELRKRDEP KLGGIFVDFV  60
   61 GGAMAHRRKF GGGRGEAVAK AVGIKGDYLP DVVDATAGLG RDAFVLASVG CRVRMLERNP 120
  121 VVAALLDDGL ARGYADAEIG GWLQERLQLI HASSLTALTD ITPRPQVVYL DPMFPHKQKS 180
  181 ALVKKEMRVF QSLVGPDLDA DGLLEPARLL ATKRVVVKRP DYAPPLANVA TPNAVVTKGH 240
  241 RFDIYAGTPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	2pkwA
Description:	No description for 2pkwA was found.

Predicted functions:

Term	Confidence	Notes
transferase activity	0.569065423404044	bayes_pls_golite062009
catalytic activity	0.486907672100804	bayes_pls_golite062009
methyltransferase activity	0.155495931533276	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.145822362574272	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: