YRC Public Data Repository - Protein Structure Prediction

Protein:	YHII_ECOLI
Organism:	Escherichia coli
Length:	355 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHII_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|59479586, gi\|... - gi\|59711485\|ref\|YP_204261.1\| EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein co...	239.0	[0..1]	[340..4]
gi\|84379198, gi\|... - gi\|84385882\|ref\|ZP_00988912.1\| multidrug resistance protein A [Vibrio splendidus 12B01], gi\|84379198...	231.0	[0..2]	[338..13]
gi\|86145233, gi\|... - gi\|86145233\|ref\|ZP_01063564.1\| multidrug resistance protein A [Vibrio sp. MED222], gi\|85836810\|gb\|EA...	231.0	[0..2]	[338..13]
gi\|90432890, gi\|... - gi\|90591155\|ref\|ZP_01246799.1\| Secretion protein HlyD [Flavobacterium johnsoniae UW101], gi\|90432890...	228.0	[0..1]	[339..1]
gi\|121602426, gi... - gi\|83751656\|ref\|ZP_00948069.1\| COG1566: Multidrug resistance efflux pump [Bartonella bacilliformis K...	225.0	[0..1]	[344..14]
gi\|26988702, gi\|... - gi\|26988702\|ref\|NP_744127.1\| secretion protein HlyD family protein [Pseudomonas putida KT2440], gi\|2...	223.0	[0..3]	[344..38]
gi\|88935565, gi\|... - gi\|88935565\|ref\|ZP_01141195.1\| putative HlyD family multidrug secretion protein [Geobacter uraniumre...	222.0	[0..5]	[341..1]
gi\|86283344, gi\|... - gi\|86359242\|ref\|YP_471134.1\| multidrug resistance efflux protein [Rhizobium etli CFN 42], gi\|8628334...	221.0	[0..3]	[344..60]
gi\|88758840 - gi\|88758840\|emb\|CAJ77848.1\| RND family drug transporter [Acinetobacter baumannii]	220.0	[0..4]	[341..16]
gi\|148513048, gi... - gi\|82739797\|ref\|ZP_00902584.1\| HlyD family secretion protein [Pseudomonas putida F1], gi\|82713141\|gb...	220.0	[0..3]	[344..38]

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Predicted Domain #1

Region A:
Residues: [1-355]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKSKRHLAW WVVGLLAVAA IVAWWLLRPA GVPEGFAVSN GRIEATEVDI ASKIAGRIDT  60
   61 ILVKEGKFVR EGEVLAKMDT RVLQEQRLEA IAQIKEAQSA VAAAQALLEQ RQSETRAAQS 120
  121 LVNQRQAELD SVAKRHTRSR SLAQRGAISA QQLDDDRAAA ESARAALESA KAQVSASKAA 180
  181 IEAARTNIIQ AQTRVEAAQA TERRIAADID DSELKAPRDG RVQYRVAEPG EVLAAGGRVL 240
  241 NMVDLSDVYM TFFLPTEQAG TLKLGGEARL ILDAAPDLRI PATISFVASV AQFTPKTVET 300
  301 SDERLKLMFR VKARIPPELL QQHLEYVKTG LPGVAWVRVN EELPWPDDLV VRLPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.221849
Match:	2f1mA
Description:	No description for 2f1mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits