YRC Public Data Repository - Protein Structure Prediction

Protein:	YHGE_ECOLI
Organism:	Escherichia coli
Length:	574 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHGE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|188487099, gi... - gi\|75516130\|ref\|ZP_00738248.1\| hypothetical protein Ecol5_01000190 [Escherichia coli 53638], gi\|1884...	573.0	[0..1]	[574..1]
gi\|13363718, gi\|... - gi\|15833498\|ref\|NP_312271.1\| putative transport [Escherichia coli O157:H7 str. Sakai], gi\|13363718\|d... gi\|217326487, gi... - gi\|217326487\|ref\|ZP_03442571.1\| putative membrane protein [Escherichia coli O157:H7 str. TW14588], g... gi\|209399070, gi... - gi\|209399070\|ref\|YP_002272836.1\| hypothetical protein ECH74115_4707 [Escherichia coli O157:H7 str. E... gi\|208821618, gi... - gi\|208821618\|ref\|ZP_03261938.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|208733842, gi... - gi\|208812565\|ref\|ZP_03253894.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|254594716, gi... - gi\|254795316\|ref\|YP_003080153.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|168779483, gi... - gi\|189002212\|gb\|EDU71198.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|187771523, gi... - gi\|187771523\|gb\|EDU35367.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|189364493, gi... - gi\|189364493\|gb\|EDU82912.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|189369556, gi... - gi\|189369556\|gb\|EDU87972.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|13363718, gi\|... - gi\|15833498\|ref\|NP_312271.1\| putative transport [Escherichia coli O157:H7], gi\|13363718\|dbj\|BAB37667... gi\|208729454, gi... - gi\|208809653\|ref\|ZP_03251990.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4206], gi... gi\|209756546, gi... - pir\|\|B86005 probable transport yhgE [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|195934890 - gi\|195934890\|ref\|ZP_03080272.1\| putative transport [Escherichia coli O157:H7 str. EC4024] gi\|189379908, gi... - gi\|189379908\|gb\|EDU98324.1\| putative membrane protein [Escherichia coli O157:H7 str. EC508], gi\|1687... gi\|12518028, gi\|... - gi\|15803905\|ref\|NP_289941.1\| putative transport [Escherichia coli O157:H7 EDL933], gi\|12518028\|gb\|AA... gi\|189374288, gi... - gi\|189374288\|gb\|EDU92704.1\| putative membrane protein [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|189359258, gi... - gi\|189359258\|gb\|EDU77677.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|168747123, gi... - gi\|188018354\|gb\|EDU56476.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4113], gi\|168...	572.0	[0..1]	[574..1]
gi\|190902054, gi... - gi\|75228944\|ref\|ZP_00715536.1\| hypothetical protein EcolB7_01002781 [Escherichia coli B7A], gi\|19116...	571.0	[0..1]	[574..1]
gi\|187427664, gi... - gi\|75179980\|ref\|ZP_00699967.1\| hypothetical protein SboyB_01000308 [Shigella boydii BS512], gi\|18773...	570.0	[0..1]	[574..1]
gi\|193068849, gi... - gi\|75237003\|ref\|ZP_00721059.1\| hypothetical protein EcolE1_01001834 [Escherichia coli E110019], gi\|1...	570.0	[0..1]	[574..1]
gi\|194425395, gi... - gi\|83588733\|ref\|ZP_00927357.1\| hypothetical protein Ecol1_01000366 [Escherichia coli 101-1], gi\|1944...	569.0	[0..1]	[574..1]
gi\|81247168, gi\|... - gi\|82545757\|ref\|YP_409704.1\| putative transport [Shigella boydii Sb227], gi\|81247168\|gb\|ABB67876.1\| ...	569.0	[0..1]	[574..1]
gi\|24053871, gi\|... - gi\|24114664\|ref\|NP_709174.1\| putative transport protein [Shigella flexneri 2a str. 301], gi\|24053871...	568.0	[0..1]	[574..1]
gi\|110643635, gi... - gi\|110643635\|ref\|YP_671365.1\| hypothetical protein ECP_3488 [Escherichia coli 536], gi\|110345227\|gb\|...	567.0	[0..1]	[574..1]
gi\|81242929, gi\|... - gi\|82778781\|ref\|YP_405130.1\| putative transport [Shigella dysenteriae Sd197], gi\|81242929\|gb\|ABB6363...	567.0	[0..1]	[574..1]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNVELSPAT RWGMIATGLL QGLVCYLLIA WLSGKNHSWI VYGVPATVAF SSVLLFSVIS  60
   61 FKQKRLWGWL ALVFIATLGM SGWLKWQTDG MNPWRAEKAL WDFGCYLLLM AMLLLPWIQQ 120
  121 SLRIRNDSSR YRYFYQSVWH NVLILLVIFL ANGLTWLVLL LWSELFKLVG ITFFNTLFFA 180
  181 TDWFIYLTLG LVTALAVILA RTQSRLIDSI QKLFTLIATG LLPLVSLLTL MFIITLPFTG 240
  241 LSAIS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [246-323]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHISAAGLLL TLAFLQLILM AIVRDPQKAS LPWTGPLRCL IKTALLVAPL YVFVAAWALW  60
   61 LRVAQYGWTV DRLQGVLA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [324-574]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLVLLVWSLG YFVSIVWRKG QNPVVLQGKV NLAVSLLVLV ILVLLNSPVL DSMRISVNSH  60
   61 MARYQSGKNT SDQVTIYMLE QSGRYGRAAL ESLKSDAGFM KDPKRARDLL MALDGEQHLQ 120
  121 QQVSEKVLAD NVLIAPGSVK PDATFWSALI QDRYNVMTCI EKDACVLVEQ DLNSDGQAER 180
  181 ILFAFNDDRV IVYGFDSDRK EWDALDMSLL PNEITKEKLL TAAKDGKLGT KPKAWRDLVV 240
  241 DGERLNVNLN E

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits