YRC Public Data Repository - Protein Structure Prediction

Protein:	YHET_ECOLI
Organism:	Escherichia coli
Length:	340 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHET_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|192957870, gi... - gi\|75236954\|ref\|ZP_00721010.1\| COG0429: Predicted hydrolase of the alpha/beta-hydrolase fold [Escher... gi\|191168395, gi... - gi\|75228395\|ref\|ZP_00715041.1\| COG0429: Predicted hydrolase of the alpha/beta-hydrolase fold [Escher... gi\|75211721, gi\|... - gi\|75211721\|ref\|ZP_00711785.1\| COG0429: Predicted hydrolase of the alpha/beta-hydrolase fold [Escher... gi\|157158481, gi... - gi\|75188129\|ref\|ZP_00701396.1\| COG0429: Predicted hydrolase of the alpha/beta-hydrolase fold [Escher... gi\|209920806, gi... - gi\|209920806\|ref\|YP_002294890.1\| putative hydrolase [Escherichia coli SE11], gi\|209914065\|dbj\|BAG791... gi\|218555898, gi... - gi\|218555898\|ref\|YP_002388811.1\| putative hydrolase [Escherichia coli IAI1], gi\|218362666\|emb\|CAR002... gi\|218353765, gi... - gi\|218697033\|ref\|YP_002404700.1\| putative hydrolase [Escherichia coli 55989], gi\|218353765\|emb\|CAV00... gi\|193061651, gi... - gi\|75260356\|ref\|ZP_00731624.1\| COG0429: Predicted hydrolase of the alpha/beta-hydrolase fold [Escher...	229.0	[0..1]	[340..1]
gi\|13363677, gi\|... - gi\|15833458\|ref\|NP_312231.1\| hypothetical protein ECs4204 [Escherichia coli O157:H7], gi\|13363677\|db... gi\|189002563, gi... - gi\|189002563\|gb\|EDU71549.1\| hydrolase, alpha/beta fold family [Escherichia coli O157:H7 str. EC4076]... gi\|209756888, gi... - pir\|\|A86000 hypothetical protein yheT [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|168772750, gi... - gi\|187771757\|gb\|EDU35601.1\| hydrolase, alpha/beta fold family [Escherichia coli O157:H7 str. EC4196]... gi\|168759382, gi... - gi\|189369674\|gb\|EDU88090.1\| hydrolase, alpha/beta fold family [Escherichia coli O157:H7 str. EC4501]... gi\|12517975, gi\|... - gi\|15803867\|ref\|NP_289901.1\| putative hydrolase [Escherichia coli O157:H7 EDL933], gi\|12517975\|gb\|AA... gi\|189359104, gi... - gi\|189359104\|gb\|EDU77523.1\| hydrolase, alpha/beta fold family [Escherichia coli O157:H7 str. EC4401]... gi\|208805754, gi... - gi\|208805754\|ref\|ZP_03248091.1\| hydrolase, alpha/beta fold family [Escherichia coli O157:H7 str. EC4... gi\|195934850 - gi\|195934850\|ref\|ZP_03080232.1\| putative hydrolase [Escherichia coli O157:H7 str. EC4024] gi\|189379990, gi... - gi\|189379990\|gb\|EDU98406.1\| hydrolase, alpha/beta fold family [Escherichia coli O157:H7 str. EC508],... gi\|189374279, gi... - gi\|189374279\|gb\|EDU92695.1\| hydrolase, alpha/beta fold family [Escherichia coli O157:H7 str. EC869],... gi\|254795277, gi... - gi\|254795277\|ref\|YP_003080114.1\| predicted hydrolase [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|188014194, gi... - gi\|188014194\|gb\|EDU52316.1\| hydrolase, alpha/beta fold family [Escherichia coli O157:H7 str. EC4113]... gi\|13363677, gi\|... - gi\|15833458\|ref\|NP_312231.1\| putative hydrolase [Escherichia coli O157:H7 str. Sakai], gi\|13363677\|d... gi\|217320877, gi... - gi\|217324656\|ref\|ZP_03440740.1\| hydrolase, alpha/beta fold family [Escherichia coli O157:H7 str. TW1... gi\|209400340, gi... - gi\|209400340\|ref\|YP_002272795.1\| hydrolase, alpha/beta fold family [Escherichia coli O157:H7 str. EC... gi\|208821904, gi... - gi\|208821904\|ref\|ZP_03262224.1\| hydrolase, alpha/beta fold family [Escherichia coli O157:H7 str. EC4... gi\|208812264, gi... - gi\|208812264\|ref\|ZP_03253593.1\| hydrolase, alpha/beta fold family [Escherichia coli O157:H7 str. EC4...	229.0	[0..1]	[340..1]
gi\|81242783, gi\|... - gi\|82778635\|ref\|YP_404984.1\| putative hydrolase [Shigella dysenteriae Sd197], gi\|81242783\|gb\|ABB6349...	228.0	[0..1]	[340..1]
gi\|157162830, gi... - gi\|75197286\|ref\|ZP_00707356.1\| COG0429: Predicted hydrolase of the alpha/beta-hydrolase fold [Escher...	228.0	[0..1]	[340..1]
gi\|91074404, gi\|... - gi\|91212830\|ref\|YP_542816.1\| putative hydrolase [Escherichia coli UTI89], gi\|91074404\|gb\|ABE09285.1\|... gi\|226902349, gi... - gi\|237703085\|ref\|ZP_04533566.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|117625630, gi... - gi\|117625630\|ref\|YP_858953.1\| putative hydrolase [Escherichia coli APEC O1], gi\|115514754\|gb\|ABJ0282... gi\|218560415, gi... - gi\|218560415\|ref\|YP_002393328.1\| putative hydrolase [Escherichia coli S88], gi\|218367184\|emb\|CAR0495...	228.0	[0..1]	[340..1]
gi\|110643593, gi... - gi\|110643593\|ref\|YP_671323.1\| putative hydrolase [Escherichia coli 536], gi\|110345185\|gb\|ABG71422.1\|... gi\|218429198, gi... - gi\|218691634\|ref\|YP_002399846.1\| putative hydrolase [Escherichia coli ED1a], gi\|218429198\|emb\|CAR100... gi\|75241550, gi\|... - gi\|75241550\|ref\|ZP_00725395.1\| COG0429: Predicted hydrolase of the alpha/beta-hydrolase fold [Escher...	228.0	[0..1]	[340..1]
gi\|110807187, gi... - gi\|110807187\|ref\|YP_690707.1\| putative hydrolase [Shigella flexneri 5 str. 8401], gi\|110616735\|gb\|AB...	228.0	[0..1]	[340..1]
gi\|73857337, gi\|... - gi\|74313860\|ref\|YP_312279.1\| putative hydrolase [Shigella sonnei Ss046], gi\|73857337\|gb\|AAZ90044.1\| ...	228.0	[0..1]	[340..1]
gi\|227839367, gi... - gi\|227883488\|ref\|ZP_04001293.1\| hydrolase [Escherichia coli 83972], gi\|227839367\|gb\|EEJ49833.1\| hydr... gi\|26249952, gi\|... - gi\|26249952\|ref\|NP_755992.1\| putative hydrolase [Escherichia coli CFT073], gi\|26110380\|gb\|AAN82566.1...	228.0	[0..1]	[340..1]
gi\|24114618, gi\|... - gi\|24114618\|ref\|NP_709128.1\| putative hydrolase [Shigella flexneri 2a str. 301], gi\|24053817\|gb\|AAN4...	228.0	[0..1]	[340..1]

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Predicted Domain #1

Region A:
Residues: [1-340]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQITTTDAN EFSSSAEFIP MRGFSNCHLQ TMLPRLFRRQ VKFTPYWQRL ELPDGDFVDL  60
   61 AWSENPAQAQ HKPRLVVFHG LEGSLNSPYA HGLVEAAQKR GWLGVVMHFR GCSGEPNRMH 120
  121 RIYHSGETED ASWFLRWLQR EFGHAPTAAV GYSLGGNMLA CLLAKEGNDL PVDAAVIVSA 180
  181 PFMLEACSYH MEKGFSRVYQ RYLLNLLKAN AARKLAAYPG TLPINLAQLK SVRRIREFDD 240
  241 LITARIHGYA DAIDYYRQCS AMPMLNRIAK PTLIIHAKDD PFMDHQVIPK PESLPPQVEY 300
  301 QLTEHGGHVG FIGGTLLHPQ MWLESRIPDW LTTYLEAKSC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.522879
Match:	1va4A
Description:	Pseudomonas fluorescens aryl esterase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.629869101256762	bayes_pls_golite062009
hydrolase activity	0.512422589119661	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: