YRC Public Data Repository - Protein Structure Prediction

Protein:	Y235_HAEIN, YHDL...
Organism:	Haemophilus influenzae
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y235_HAEIN, YHDL....

Description	E-value	Query Range	Subject Range
gi\|15602994, gi\|... - gi\|15602994\|ref\|NP_246066.1\| hypothetical protein PM1129 [Pasteurella multocida subsp. multocida str...	101.0	[0..1]	[69..1]
gi\|52426015, gi\|... - gi\|52426015\|ref\|YP_089152.1\| hypothetical protein MS1960 [Mannheimia succiniciproducens MBEL55E], gi...	99.0	[0..1]	[69..13]
gi\|53732892 - gi\|53732892\|ref\|ZP_00155232.2\| COG3036: Uncharacterized protein conserved in bacteria [Haemophilus i... gi\|144983376 - gi\|144983376\|gb\|EDJ90858.1\| hypothetical protein CGSHi22421_05515 [Haemophilus influenzae R3021] gi\|145637212, gi... - gi\|145637212\|ref\|ZP_01792874.1\| hypothetical protein CGSHiHH_00813 [Haemophilus influenzae PittHH], ... gi\|145631091 - gi\|145631091\|ref\|ZP_01786866.1\| hypothetical protein CGSHi22421_05515 [Haemophilus influenzae 22.4-2...	99.0	[0..1]	[69..1]
gi\|68516089, gi\|... - gi\|68546261\|ref\|ZP_00585809.1\| Protein of unknown function DUF331 [Shewanella amazonensis SB2B], gi\|...	90.0	[0..5]	[68..35]
gi\|117614394, gi... - gi\|78684202\|ref\|ZP_00848987.1\| conserved hypothetical protein [Shewanella sp. ANA-3], gi\|78507954\|gb...	89.0	[0..5]	[68..2]
gi\|82744339, gi\|... - gi\|82744339\|ref\|ZP_00906907.1\| conserved hypothetical protein [Shewanella sp. W3-18-1], gi\|82718303\|... gi\|77811717, gi\|... - gi\|77813269\|ref\|ZP_00812547.1\| Protein of unknown function DUF331 [Shewanella putrefaciens CN-32], g...	88.0	[0..1]	[68..1]
gi\|68519376, gi\|... - gi\|68542935\|ref\|ZP_00582655.1\| Protein of unknown function DUF331 [Shewanella baltica OS155], gi\|685...	86.0	[0..1]	[68..1]
gi\|82407175, gi\|... - gi\|82494931\|ref\|ZP_00880510.1\| conserved hypothetical protein [Shewanella sp. MR-4], gi\|82407175\|gb\|... gi\|78688984, gi\|... - gi\|78688984\|ref\|ZP_00853650.1\| conserved hypothetical protein [Shewanella sp. MR-7], gi\|78511667\|gb\|...	86.0	[0..5]	[68..2]
gi\|152999065, gi... - gi\|152999065\|ref\|YP_001364746.1\| hypothetical protein Shew185_0515 [Shewanella baltica OS185], gi\|15... gi\|113908862, gi... - gi\|160873658\|ref\|YP_001552974.1\| hypothetical protein Sbal195_0536 [Shewanella baltica OS195], gi\|16...	86.0	[0..1]	[68..1]
gi\|152979695, gi... - gi\|75429863\|ref\|ZP_00732481.1\| conserved hypothetical protein [Actinobacillus succinogenes 130Z], gi...	84.0	[0..7]	[67..16]

Back

Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKKQKSAVE NETVYLHTRG VIKDNAVMAL LGDKLFRQRV EKKRKGKGSY QRKAKHPGKI  60
   61 FEKPDYKFF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.569	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.360	a.190.1	Description not found.
View	Download	0.267	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.259	g.37.1	C2H2 and C2HC zinc fingers

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits