YRC Public Data Repository - Protein Structure Prediction

Protein:	AAEB_ECOLI, YHCP...
Organism:	Escherichia coli
Length:	655 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AAEB_ECOLI, YHCP....

Description	E-value	Query Range	Subject Range
AAEB_ECOHS - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli O9:H4 (strain HS) GN=aaeB PE=3 SV...	342.0	[0..1]	[655..1]
gi\|254038400, gi... - gi\|254038400\|ref\|ZP_04872458.1\| p-hydroxybenzoic acid efflux subunit AaeB [Escherichia sp. 1_1_43], ... gi\|124500537, gi... - gi\|124528514\|ref\|ZP_01699803.1\| Fusaric acid resistance protein conserved region [Escherichia coli B... gi\|188490735, gi... - gi\|75511864\|ref\|ZP_00734476.1\| COG1289: Predicted membrane protein [Escherichia coli 53638], gi\|1884... gi\|75256610, gi\|... - gi\|75256610\|ref\|ZP_00728240.1\| COG1289: Predicted membrane protein [Escherichia coli E22], gi\|193065... AAEB_SHIF8 - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Shigella flexneri serotype 5b (strain 8401) GN=aae... gi\|193070298, gi... - gi\|75234852\|ref\|ZP_00719143.1\| COG1289: Predicted membrane protein [Escherichia coli E110019], gi\|19... AAEB_SHIFL - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Shigella flexneri GN=aaeB PE=3 SV=1 gi\|75228634, gi\|... - gi\|75228634\|ref\|ZP_00715259.1\| COG1289: Predicted membrane protein [Escherichia coli B7A], gi\|191168... gi\|75209677, gi\|... - gi\|75209677\|ref\|ZP_00709889.1\| COG1289: Predicted membrane protein [Escherichia coli B171], gi\|19442... AAEB_ECO24 - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) ... AAEB_ECOSE - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli (strain SE11) GN=aaeB PE=3 SV=1 AAEB_ECOLC - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Cr... AAEB_ECO55 - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli (strain 55989 / EAEC) GN=aaeB PE=... AAEB_ECO8A - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli O8 (strain IAI1) GN=aaeB PE=3 SV=... gi\|24114527, gi\|... - gi\|24114527\|ref\|NP_709037.1\| p-hydroxybenzoic acid efflux subunit AaeB [Shigella flexneri 2a str. 30... gi\|30042831, gi\|... - gi\|30064572\|ref\|NP_838743.1\| p-hydroxybenzoic acid efflux subunit AaeB [Shigella flexneri 2a str. 24... AAEB_ECOLU - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPE...	340.0	[0..1]	[655..1]
AAEB_ECOSM - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=aaeB ... AAEB_ECO27 - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) ... AAEB_ECO45 - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=aa... gi\|237706013, gi... - gi\|237706013\|ref\|ZP_04536494.1\| p-hydroxybenzoic acid efflux subunit AaeB [Escherichia sp. 3_2_53FAA... sp\|B7UJX2\|AAEB_ECO27 - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) ... AAEB_ECOUT - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli (strain UTI89 / UPEC) GN=aaeB PE=... AAEB_ECOK1 - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli O1:K1 / APEC GN=aaeB PE=3 SV=1	339.0	[0..1]	[655..1]
AAEB_SHISS - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Shigella sonnei (strain Ss046) GN=aaeB PE=3 SV=1	339.0	[0..1]	[655..1]
AAEB_SHIDS - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=...	339.0	[0..1]	[655..1]
gi\|191173852, gi... - gi\|75237905\|ref\|ZP_00721916.1\| COG1289: Predicted membrane protein [Escherichia coli F11], gi\|191173... AAEB_ECOL5 - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN...	338.0	[0..1]	[655..1]
AAEB_ECO57 - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli O157:H7 GN=aaeB PE=3 SV=1 gi\|209757726, gi... - pir\|\|A91143 hypothetical protein ECs4113 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|12517861, gi\|... - gi\|15803774\|ref\|NP_289808.1\| p-hydroxybenzoic acid efflux subunit AaeB [Escherichia coli O157:H7 EDL... gi\|13363586, gi\|... - gi\|15833367\|ref\|NP_312140.1\| p-hydroxybenzoic acid efflux subunit AaeB [Escherichia coli O157:H7 str... AAEB_ECO5E - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN... gi\|217319826, gi... - gi\|217327459\|ref\|ZP_03443542.1\| p-hydroxybenzoic acid efflux pump subunit aaeB [Escherichia coli O15... gi\|195939438 - gi\|195939438\|ref\|ZP_03084820.1\| p-hydroxybenzoic acid efflux subunit AaeB [Escherichia coli O157:H7 ... gi\|208727145, gi... - gi\|208807344\|ref\|ZP_03249681.1\| p-hydroxybenzoic acid efflux pump subunit aaeB [Escherichia coli O15... gi\|208733224, gi... - gi\|208811947\|ref\|ZP_03253276.1\| p-hydroxybenzoic acid efflux pump subunit aaeB [Escherichia coli O15... gi\|208738326, gi... - gi\|208818203\|ref\|ZP_03258523.1\| p-hydroxybenzoic acid efflux pump subunit aaeB [Escherichia coli O15... gi\|254795183, gi... - gi\|254795183\|ref\|YP_003080020.1\| p-hydroxybenzoic acid efflux pump subunit AaeB [Escherichia coli O1... gi\|168769096, gi... - gi\|189361798\|gb\|EDU80217.1\| p-hydroxybenzoic acid efflux pump subunit aaeB [Escherichia coli O157:H7... gi\|168777635, gi... - gi\|187767162\|gb\|EDU31006.1\| p-hydroxybenzoic acid efflux pump subunit aaeB [Escherichia coli O157:H7... gi\|189001057, gi... - gi\|189001057\|gb\|EDU70043.1\| p-hydroxybenzoic acid efflux pump subunit aaeB [Escherichia coli O157:H7... gi\|189376844, gi... - gi\|189376844\|gb\|EDU95260.1\| p-hydroxybenzoic acid efflux pump subunit aaeB [Escherichia coli O157:H7... gi\|188013947, gi... - gi\|188013947\|gb\|EDU52069.1\| p-hydroxybenzoic acid efflux pump subunit aaeB [Escherichia coli O157:H7... gi\|189358703, gi... - gi\|189358703\|gb\|EDU77122.1\| p-hydroxybenzoic acid efflux pump subunit aaeB [Escherichia coli O157:H7... gi\|189366151, gi... - gi\|189366151\|gb\|EDU84567.1\| p-hydroxybenzoic acid efflux pump subunit aaeB [Escherichia coli O157:H7...	338.0	[0..4]	[655..4]
AAEB_SHIB3 - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / ...	338.0	[0..1]	[655..1]
gi\|227887955, gi... - gi\|227887955\|ref\|ZP_04005760.1\| p-hydroxybenzoic acid efflux subunit AaeB [Escherichia coli 83972], ... AAEB_ECOL6 - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 70092... AAEB_ECOL6 - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Escherichia coli O6 GN=aaeB PE=2 SV=1	338.0	[0..1]	[655..1]
AAEB_SHIBS - p-hydroxybenzoic acid efflux pump subunit AaeB OS=Shigella boydii serotype 4 (strain Sb227) GN=aaeB ...	337.0	[0..1]	[655..1]

Back

Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIFSIANQH IRFAVKLATA IVLALFVGFH FQLETPRWAV LTAAIVAAGT AFAAGGEPYS  60
   61 GAIRYRGFLR IIGTFIGCIA GLVIIIAMIR APLLMILVCC IWAGFCTWIS SLVRIENSYA 120
  121 WGLAGYTALI IVITIQPEPL LTPQFAVE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [149-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RCSEIVIGIV CAIMADLLFS PRSIKQEVDR ELESLLVAQY QLMQLCIKHG DGEVVDKAWG  60
   61 DLVRRTTALQ GMRSNLNMES SRWARANRRL KAINTLSLTL ITQSCETYLI QNTRPELITD 120
  121 TFREFFDTPV ETAQDVHKQL KRLRRVIAWT GERETPVTIY SWVAAATRYQ LLKRGVISNT 180
  181 KINATEEEIL QGEPEVKVES AERHHAMVNF WRTTLSCILG TLFWLW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.12
Match:	1mqlB
Description:	BHA of Ukr/63
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [375-472]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGWTSGSGAM VMIAVVTSLA MRLPNPRMVA IDFIYGTLAA LPLGLLYFLV IIPNTQQSML  60
   61 LLCISLAVLG FFLGIEVQKR RLGSMGALAS TINIIVLD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [473-655]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPMTFHFSQF LDSALGQIVG CVLAFTVILL VRDKSRDRTG RVLLNQFVSA AVSAMTTNVA  60
   61 RRKENHLPAL YQQLFLLMNK FPGDLPKFRL ALTMIIAHQR LRDAPIPVNE DLSAFHRQMR 120
  121 RTADHVISAR SDDKRRRYFG QLLEELEIYQ EKLRIWQAPP QVTEPVNRLA GMLHKYQHAL 180
  181 TDS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.867	0.199	transport	a.63.1	Apolipophorin-III

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits