YRC Public Data Repository - Protein Structure Prediction

Protein:	YHCG_ECOLI
Organism:	Escherichia coli
Length:	375 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHCG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110345046, gi... - gi\|110643454\|ref\|YP_671184.1\| hypothetical protein ECP_3303 [Escherichia coli 536], gi\|110345046\|gb\|... gi\|190905299, gi... - gi\|75236483\|ref\|ZP_00720578.1\| COG4804: Uncharacterized conserved protein [Escherichia coli F11], gi...	507.0	[0..1]	[375..1]
gi\|209913949, gi... - gi\|209920690\|ref\|YP_002294774.1\| hypothetical protein ECSE_3499 [Escherichia coli SE11], gi\|20991394... gi\|193065382, gi... - gi\|75256590\|ref\|ZP_00728220.1\| COG4804: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|192956374, gi... - gi\|75234872\|ref\|ZP_00719163.1\| COG4804: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|75209657, gi\|... - gi\|75209657\|ref\|ZP_00709869.1\| COG4804: Uncharacterized conserved protein [Escherichia coli B171], g...	506.0	[0..1]	[375..1]
gi\|75188020, gi\|... - gi\|75188020\|ref\|ZP_00701287.1\| COG4804: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|218362552, gi... - gi\|218555784\|ref\|YP_002388697.1\| hypothetical protein ECIAI1_3362 [Escherichia coli IAI1], gi\|218362...	504.0	[0..1]	[375..1]
gi\|82778528, gi\|... - gi\|82778528\|ref\|YP_404877.1\| hypothetical protein SDY_3395 [Shigella dysenteriae Sd197], gi\|81242676...	503.0	[0..1]	[375..1]
gi\|13363566, gi\|... - gi\|15833347\|ref\|NP_312120.1\| hypothetical protein ECs4093 [Escherichia coli O157:H7], gi\|13363566\|db... gi\|209400395, gi... - gi\|209400395\|ref\|YP_002272684.1\| hypothetical protein ECH74115_4537 [Escherichia coli O157:H7 str. E... gi\|25339886, gi\|... - pir\|\|H85985 hypothetical protein yhcG [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|208740936, gi... - gi\|208820813\|ref\|ZP_03261133.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|15803754, gi\|... - gi\|15803754\|ref\|NP_289788.1\| hypothetical protein Z4578 [Escherichia coli O157:H7 EDL933], gi\|125178... gi\|217326778, gi... - gi\|217326778\|ref\|ZP_03442861.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|195939414 - gi\|195939414\|ref\|ZP_03084796.1\| hypothetical protein EscherichcoliO157_23888 [Escherichia coli O157:... gi\|189376811, gi... - gi\|189376811\|gb\|EDU95227.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|208734028, gi... - gi\|208812751\|ref\|ZP_03254080.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208729511, gi... - gi\|208809710\|ref\|ZP_03252047.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|168769071, gi... - gi\|189361746\|gb\|EDU80165.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189366152, gi... - gi\|189366152\|gb\|EDU84568.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189001039, gi... - gi\|189001039\|gb\|EDU70025.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168777270, gi... - gi\|187767456\|gb\|EDU31300.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|13363566, gi\|... - gi\|15833347\|ref\|NP_312120.1\| hypothetical protein ECs4093 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189358383, gi... - gi\|189358383\|gb\|EDU76802.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168751621, gi... - gi\|188014382\|gb\|EDU52504.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|254795163, gi... - gi\|254795163\|ref\|YP_003080000.1\| hypothetical protein ECSP_4189 [Escherichia coli O157:H7 str. TW143...	462.0	[0..1]	[375..1]
gi\|84616897 - gi\|84616897\|emb\|CAJ13791.1\| conserved hypothetical protein [Desulfococcus multivorans]	458.0	[0..2]	[370..3]
gi\|46135200, gi\|... - gi\|75910705\|ref\|YP_325001.1\| hypothetical protein Ava_4508 [Anabaena variabilis ATCC 29413], gi\|7570...	456.0	[0..5]	[370..12]
gi\|197095668, gi... - gi\|197364191\|ref\|YP_002143828.1\| hypothetical protein SSPA2987 [Salmonella enterica subsp. enterica ... gi\|161616346, gi... - gi\|161616346\|ref\|YP_001590311.1\| hypothetical protein SPAB_04155 [Salmonella enterica subsp. enteric... gi\|56415261, gi\|... - gi\|56415261\|ref\|YP_152336.1\| hypothetical protein SPA3200 [Salmonella enterica subsp. enterica serov...	452.0	[0..9]	[374..10]
gi\|32037569, gi\|... - gi\|32037569\|ref\|ZP_00135841.1\| COG4804: Uncharacterized conserved protein [Pseudomonas aeruginosa UC...	451.0	[0..3]	[371..9]
gi\|29143583, gi\|... - gi\|29143583\|ref\|NP_806925.1\| hypothetical protein t3249 [Salmonella enterica subsp. enterica serovar... gi\|16762094 - gi\|16762094\|ref\|NP_457711.1\| hypothetical protein STY3512 [Salmonella enterica subsp. enterica serov... gi\|25339888, gi\|... - gi\|25339888\|pir\|\|AC0907 conserved hypothetical protein STY3512 [imported] - Salmonella enterica subs... gi\|213648879 - gi\|213648879\|ref\|ZP_03378932.1\| hypothetical protein SentesTy_17313 [Salmonella enterica subsp. ente... gi\|213609847 - gi\|213609847\|ref\|ZP_03369673.1\| hypothetical protein SentesTyp_04680 [Salmonella enterica subsp. ent... gi\|214002792 - gi\|214002792\|ref\|ZP_03413527.1\| hypothetical protein Salmonellentericaenterica_21746 [Salmonella ent... gi\|213974638 - gi\|213974638\|ref\|ZP_03401897.1\| hypothetical protein Salmonellaentericaenterica_08628 [Salmonella en... gi\|213053133 - gi\|213053133\|ref\|ZP_03346011.1\| hypothetical protein Salmoneentericaenterica_09530 [Salmonella enter... gi\|213424397 - gi\|213424397\|ref\|ZP_03357220.1\| hypothetical protein SentesTyphi_01330 [Salmonella enterica subsp. e... gi\|213420420 - gi\|213420420\|ref\|ZP_03353486.1\| hypothetical protein Salmonentericaenterica_22818 [Salmonella enteri...	451.0	[0..9]	[374..10]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLSEGTTA GYQQIHDGII HLVDSARTET VRSVNALMTA TYQEIGRRIV EFEQGGEARA  60
   61 AYGAQLIKRL SKDLCLRYKR G

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.941	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

Predicted Domain #2

Region A:
Residues: [82-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSAKNLRQMR LFYLFFQHVE IHQTMSGELT PLGIPQTPSA EFPSAKIWQT LSAKSFPLPR  60
   61 STYVRLLSVK NADARSFYEK ETLRCGWSVR QLERQIATQF YERTLLSHDK SAMLQQHAPA 120
  121 ETHILPQQAI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [212-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDPFVLEFLE LKDEYSESDF EEALINHLMD FMLELGDDFA FVGRQRRLRI DDNWFR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [268-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDLLFFHRRL RCLLIVDLKV GKFSYSDAGQ MNMYLNYAKE HWTLPDENPP IGLVLCAEKG  60
   61 AGEAHYALAG LPNTVLASEY KMQLPDEKRL ADELVRTQAV LEEGYRRR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.833	N/A	N/A	c.47.2	RNA 3'-terminal phosphate cyclase, RPTC, insert domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits