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View Structure Prediction Details

Protein: YHBJ_SALTI
Organism: Salmonella typhi
Length: 284 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHBJ_SALTI.

Description E-value Query
Range
Subject
Range
RAPZ_SALA4 - RNase adapter protein RapZ OS=Salmonella agona (strain SL483) GN=rapZ PE=3 SV=1
gi|197241221, gi... - gi|197262966|ref|ZP_03163040.1| conserved hypothetical protein [Salmonella enterica subsp. enterica ...
RAPZ_SALPK - RNase adapter protein RapZ OS=Salmonella paratyphi A (strain AKU_12601) GN=rapZ PE=3 SV=1
RAPZ_SALDC - RNase adapter protein RapZ OS=Salmonella dublin (strain CT_02021853) GN=rapZ PE=3 SV=1
RAPZ_SALNS - RNase adapter protein RapZ OS=Salmonella newport (strain SL254) GN=rapZ PE=3 SV=1
YHBJ_SALCH - UPF0042 nucleotide-binding protein yhbJ OS=Salmonella choleraesuis GN=yhbJ PE=3 SV=1
RAPZ_SALHS - RNase adapter protein RapZ OS=Salmonella heidelberg (strain SL476) GN=rapZ PE=3 SV=1
gi|194470337, gi... - gi|194470337|ref|ZP_03076321.1| conserved hypothetical protein [Salmonella enterica subsp. enterica ...
RAPZ_SALSV - RNase adapter protein RapZ OS=Salmonella schwarzengrund (strain CVM19633) GN=rapZ PE=3 SV=1
gi|205337879, gi... - gi|205337879|gb|EDZ24643.1| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...
YHBJ_SALPB - UPF0042 nucleotide-binding protein yhbJ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=y...
gi|205348469, gi... - gi|205348469|gb|EDZ35100.1| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...
gi|168463451, gi... - gi|195633703|gb|EDX52117.1| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...
gi|205343424, gi... - gi|205343424|gb|EDZ30188.1| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...
gi|205323223, gi... - gi|205323223|gb|EDZ11062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...
gi|205327648, gi... - gi|205327648|gb|EDZ14412.1| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...
gi|168231934, gi... - gi|205333839|gb|EDZ20603.1| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...
gi|197289117, gi... - gi|197289117|gb|EDY28486.1| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...
YHBJ_SALTY - UPF0042 nucleotide-binding protein yhbJ OS=Salmonella typhimurium GN=yhbJ PE=3 SV=1
gi|213053142 - gi|213053142|ref|ZP_03346020.1| hypothetical protein Salmoneentericaenterica_09585 [Salmonella enter...
gi|213426633 - gi|213426633|ref|ZP_03359383.1| hypothetical protein SentesTyphi_14088 [Salmonella enterica subsp. e...
gi|238910117 - gi|238910117|ref|ZP_04653954.1| hypothetical protein SentesTe_03125 [Salmonella enterica subsp. ente...
YHBJ_SALPA - UPF0042 nucleotide-binding protein yhbJ OS=Salmonella paratyphi A GN=yhbJ PE=3 SV=1
RAPZ_SALPC - RNase adapter protein RapZ OS=Salmonella paratyphi C (strain RKS4594) GN=rapZ PE=3 SV=1
gi|200387031, gi... - gi|200387031|ref|ZP_03213643.1| conserved hypothetical protein [Salmonella enterica subsp. enterica ...
gi|204319932, gi... - gi|204931165|ref|ZP_03221959.1| conserved hypothetical protein [Salmonella enterica subsp. enterica ...
RAPZ_SALG2 - RNase adapter protein RapZ OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rapZ PE=3 SV=1
RAPZ_SALEP - RNase adapter protein RapZ OS=Salmonella enteritidis PT4 (strain P125109) GN=rapZ PE=3 SV=1
RAPZ_SALPB - RNase adapter protein RapZ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rapZ PE=3 SV=1
YHBJ_SALCH - UPF0042 protein yhbJ OS=Salmonella choleraesuis GN=yhbJ PE=3 SV=1
lcl|NC_016856.1_... - [gene=yhbJ] [protein=hypothetical protein] [protein_id=YP_005239503.1] [location=3500704..3501558]
YHBJ_SALTY - UPF0042 protein yhbJ OS=Salmonella typhimurium GN=yhbJ PE=3 SV=1
RAPZ_SALPA - RNase adapter protein RapZ OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rapZ PE=3 SV=1
RAPZ_SALTY - RNase adapter protein RapZ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rapZ P...
RAPZ_SALCH - RNase adapter protein RapZ OS=Salmonella choleraesuis (strain SC-B67) GN=rapZ PE=3 SV=1
0.0 [1..284] [1..284]
gi|77630529, gi|... - gi|77630529|ref|ZP_00793115.1| COG1660: Predicted P-loop-containing kinase [Yersinia pseudotuberculo...
gi|77633092 - gi|77633092|ref|ZP_00795244.1| COG1660: Predicted P-loop-containing kinase [Yersinia pestis Angola]
gi|89102221 - gi|89102221|ref|ZP_01174872.1| COG1660: Predicted P-loop-containing kinase [Yersinia pestis biovar O...
0.0 [1..283] [20..302]
gi|950055, gi|21... - gi|950055|emb|CAA90684.1| orfIV [Klebsiella pneumoniae], pir||S60666 probable ATP-binding protein - ...
RAPZ_KLEOX - RNase adapter protein RapZ OS=Klebsiella oxytoca GN=rapZ PE=3 SV=3
0.0 [1..284] [1..284]
RAPZ_SHIDS - RNase adapter protein RapZ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rapZ PE=3 SV=1
0.0 [1..283] [1..283]
gi|166011383, gi... - gi|166011383|ref|ZP_02232281.1| P-loop ATPase protein family [Yersinia pestis biovar Antiqua str. E1...
gi|165937397, gi... - gi|165937397|ref|ZP_02225960.1| P-loop ATPase protein family [Yersinia pestis biovar Orientalis str....
gi|167050071, gi... - gi|167400703|ref|ZP_02306212.1| P-loop ATPase protein family [Yersinia pestis biovar Antiqua str. UG...
gi|166206576, gi... - gi|166211830|ref|ZP_02237865.1| P-loop ATPase protein family [Yersinia pestis biovar Antiqua str. B4...
RAPZ_YERPP - RNase adapter protein RapZ OS=Yersinia pestis (strain Pestoides F) GN=rapZ PE=3 SV=2
gi|165928128, gi... - gi|165928128|ref|ZP_02223960.1| P-loop ATPase protein family [Yersinia pestis biovar Orientalis str....
RAPZ_YERPG - RNase adapter protein RapZ OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rapZ PE=3 SV=1
RAPZ_YERPA - RNase adapter protein RapZ OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rapZ PE=3 SV=1
RAPZ_YERPN - RNase adapter protein RapZ OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rapZ PE=3 SV=1
gi|45443570, gi|... - gi|45443570|ref|NP_995109.1| hypothetical protein YP_3840 [Yersinia pestis biovar Microtus str. 9100...
gi|21956826, gi|... - gi|22124078|ref|NP_667501.1| hypothetical protein y0158 [Yersinia pestis KIM], gi|21956826|gb|AAM837...
gi|16123728, gi|... - gi|218930596|ref|YP_002348471.1| hypothetical protein YPO3586 [Yersinia pestis CO92], gi|16123728|re...
RAPZ_YERPS - RNase adapter protein RapZ OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rapZ PE=3 S...
RAPZ_YERPB - RNase adapter protein RapZ OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rapZ PE=3 SV...
gi|167054273, gi... - gi|167426746|ref|ZP_02318499.1| P-loop ATPase protein family [Yersinia pestis biovar Mediaevalis str...
gi|167420720, gi... - gi|167420720|ref|ZP_02312473.1| P-loop ATPase protein family [Yersinia pestis biovar Orientalis str....
RAPZ_YERPY - RNase adapter protein RapZ OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rapZ PE=3 S...
gi|167466502 - gi|167466502|ref|ZP_02331206.1| P-loop ATPase protein family [Yersinia pestis FV-1]
gi|149288996, gi... - gi|153997359|ref|ZP_02022459.1| hypothetical protein YPE_3808 [Yersinia pestis CA88-4125], gi|149288...
RAPZ_YERP3 - RNase adapter protein RapZ OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rapZ PE...
RAPZ_YERPE - RNase adapter protein RapZ OS=Yersinia pestis GN=rapZ PE=3 SV=1
gi|229899807, gi... - gi|229899807|ref|ZP_04514948.1| predicted protein with nucleoside triphosphate hydrolase domain [Yer...
gi|229836857, gi... - gi|229836857|ref|ZP_04457022.1| predicted protein with nucleoside triphosphate hydrolase domain [Yer...
gi|229695608, gi... - gi|229839242|ref|ZP_04459401.1| predicted protein with nucleoside triphosphate hydrolase domain [Yer...
Y3529_YERPS - UPF0042 nucleotide-binding protein YPTB3529 OS=Yersinia pseudotuberculosis GN=YPTB3529 PE=3 SV=1
0.0 [1..283] [1..283]
gi|254795154, gi... - gi|254795154|ref|YP_003079991.1| predicted protein with nucleoside triphosphate hydrolase domain [Es...
RAPZ_SHIFL - RNase adapter protein RapZ OS=Shigella flexneri GN=rapZ PE=3 SV=1
gi|24053679, gi|... - gi|24114494|ref|NP_709004.1| hypothetical protein SF3245 [Shigella flexneri 2a str. 301], gi|2405367...
RAPZ_ECOL6 - RNase adapter protein RapZ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rapZ PE...
sp|B7UJU5|YHBJ_ECO27 - UPF0042 nucleotide-binding protein yhbJ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yhbJ...
gi|30064543, gi|... - gi|30064543|ref|NP_838714.1| hypothetical protein S3463 [Shigella flexneri 2a str. 2457T], gi|300428...
RAPZ_ECO57 - RNase adapter protein RapZ OS=Escherichia coli O157:H7 GN=rapZ PE=3 SV=1
EG12146 - adaptor protein for GlmZ /GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase / Adaptor protei...
RAPZ_ECOL5 - RNase adapter protein RapZ OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rapZ PE=3 SV=1
gi|15803745, gi|... - gi|15803745|ref|NP_289779.1| hypothetical protein Z4568 [Escherichia coli O157:H7 EDL933], gi|125178...
RAPZ_SHIF8 - RNase adapter protein RapZ OS=Shigella flexneri serotype 5b (strain 8401) GN=rapZ PE=3 SV=1
RAPZ_ECOUT - RNase adapter protein RapZ OS=Escherichia coli (strain UTI89 / UPEC) GN=rapZ PE=3 SV=1
gi|13363557, gi|... - gi|15833338|ref|NP_312111.1| hypothetical protein ECs4084 [Escherichia coli O157:H7 str. Sakai], gi|...
gi|168800919, gi... - gi|189376848|gb|EDU95264.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi...
gi|168786091, gi... - gi|189374003|gb|EDU92419.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi...
RAPZ_ECOSM - RNase adapter protein RapZ OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rapZ PE=3 SV=1
RAPZ_ECODH - RNase adapter protein RapZ OS=Escherichia coli (strain K12 / DH10B) GN=rapZ PE=3 SV=1
gi|195940061 - gi|195940061|ref|ZP_03085443.1| hypothetical protein EscherichcoliO157_27320 [Escherichia coli O157:...
gi|194417255, gi... - gi|194434476|ref|ZP_03066736.1| conserved hypothetical protein [Shigella dysenteriae 1012], gi|19441...
gi|208814383, gi... - gi|208814383|ref|ZP_03255712.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045...
gi|208809085, gi... - gi|208809085|ref|ZP_03251422.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206...
gi|168754187, gi... - gi|189358713|gb|EDU77132.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g...
gi|168751611, gi... - gi|188014390|gb|EDU52512.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g...
gi|168769061, gi... - gi|189361728|gb|EDU80147.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g...
gi|168763742, gi... - gi|189366111|gb|EDU84527.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g...
gi|168781349, gi... - gi|189001093|gb|EDU70079.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g...
gi|168777260, gi... - gi|187767454|gb|EDU31298.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g...
YHBJ_ECOLI - UPF0042 protein yhbJ - Escherichia coli
RAPZ_ECOLC - RNase adapter protein RapZ OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rapZ PE=3 S...
gi|226899083, gi... - gi|237706043|ref|ZP_04536524.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi|22689...
RAPZ_ECOBW - RNase adapter protein RapZ OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rapZ PE=3 SV=1
gi|242378748, gi... - gi|251786475|ref|YP_003000779.1| hypothetical protein B21_03021 [Escherichia coli BL21], gi|24237874...
gi|254289897, gi... - gi|254289897|ref|YP_003055645.1| hypothetical protein ECD_03070 [Escherichia coli BL21(DE3)], gi|253...
gi|254038370, gi... - gi|254038370|ref|ZP_04872428.1| conserved hypothetical protein [Escherichia sp. 1_1_43], gi|22683999...
gi|253975048, gi... - gi|254163147|ref|YP_003046255.1| hypothetical protein ECB_03070 [Escherichia coli B str. REL606], gi...
YHBJ_ECOL6 - UPF0042 nucleotide-binding protein yhbJ OS=Escherichia coli O6 GN=yhbJ PE=3 SV=1
RAPZ_ECO7I - RNase adapter protein RapZ OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rapZ PE=3 SV=1
RAPZ_ECO55 - RNase adapter protein RapZ OS=Escherichia coli (strain 55989 / EAEC) GN=rapZ PE=3 SV=1
RAPZ_ECOLU - RNase adapter protein RapZ OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rapZ PE=3 SV=1
EG12146 - adaptor protein for GlmZ /GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase / Adaptor protei...
RAPZ_ECO5E - RNase adapter protein RapZ OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rapZ PE=3 SV=1
gi|208740177, gi... - gi|208820054|ref|ZP_03260374.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042...
RAPZ_ECO27 - RNase adapter protein RapZ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rapZ PE=3 SV=1
gi|124528485, gi... - gi|124528485|ref|ZP_01699774.1| Uncharacterised P-loop ATPase protein UPF0042 [Escherichia coli B], ...
RAPZ_ECOSE - RNase adapter protein RapZ OS=Escherichia coli (strain SE11) GN=rapZ PE=3 SV=1
RAPZ_ECO8A - RNase adapter protein RapZ OS=Escherichia coli O8 (strain IAI1) GN=rapZ PE=3 SV=1
gi|217327864, gi... - gi|217327864|ref|ZP_03443947.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458...
RAPZ_ECO81 - RNase adapter protein RapZ OS=Escherichia coli O81 (strain ED1a) GN=rapZ PE=3 SV=1
RAPZ_ECO45 - RNase adapter protein RapZ OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rapZ PE=3 SV=1
gi|75234881, gi|... - gi|75234881|ref|ZP_00719172.1| COG1660: Predicted P-loop-containing kinase [Escherichia coli E110019...
gi|192927017, gi... - gi|75256581|ref|ZP_00728211.1| COG1660: Predicted P-loop-containing kinase [Escherichia coli E22], g...
gi|75228166, gi|... - gi|75228166|ref|ZP_00714831.1| COG1660: Predicted P-loop-containing kinase [Escherichia coli B7A], g...
gi|75236214, gi|... - gi|75236214|ref|ZP_00720324.1| COG1660: Predicted P-loop-containing kinase [Escherichia coli F11], g...
RAPZ_SHIBS - RNase adapter protein RapZ OS=Shigella boydii serotype 4 (strain Sb227) GN=rapZ PE=3 SV=1
gi|551341, gi|89... - gi|89109968|ref|AP_003748.1| hypothetical protein with nucleoside triphosphate hydrolase domain [Esc...
gi|188489590, gi... - gi|75511892|ref|ZP_00734504.1| COG1660: Predicted P-loop-containing kinase [Escherichia coli 53638],...
RAPZ_SHISS - RNase adapter protein RapZ OS=Shigella sonnei (strain Ss046) GN=rapZ PE=3 SV=1
gi|194421904, gi... - gi|83585417|ref|ZP_00924063.1| COG1660: Predicted P-loop-containing kinase [Escherichia coli 101-1],...
RAPZ_ECOHS - RNase adapter protein RapZ OS=Escherichia coli O9:H4 (strain HS) GN=rapZ PE=3 SV=1
gi|75209648, gi|... - gi|75209648|ref|ZP_00709860.1| COG1660: Predicted P-loop-containing kinase [Escherichia coli B171], ...
RAPZ_SHIB3 - RNase adapter protein RapZ OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rapZ PE=3 ...
RAPZ_ECO24 - RNase adapter protein RapZ OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rapZ PE=3 SV=1
0.0 [1..283] [1..283]
RAPZ_YERE8 - RNase adapter protein RapZ OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 /...
gi|238793714, gi... - gi|77978709|ref|ZP_00834134.1| COG1660: Predicted P-loop-containing kinase [Yersinia intermedia ATCC...
0.0 [1..283] [1..283]
gi|77963470 - gi|77963470|ref|ZP_00827279.1| COG1660: Predicted P-loop-containing kinase [Yersinia mollaretii ATCC...
0.0 [1..283] [1..283]
Y285_ERWCT - UPF0042 nucleotide-binding protein ECA0285 OS=Erwinia carotovora subsp. atroseptica GN=ECA0285 PE=3 ...
RAPZ_PECAS - RNase adapter protein RapZ OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rapZ ...
RAPZ_PECCP - RNase adapter protein RapZ OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rapZ PE=...
gi|227114048 - gi|227114048|ref|ZP_03827704.1| hypothetical protein PcarbP_13829 [Pectobacterium carotovorum subsp....
gi|227326627 - gi|227326627|ref|ZP_03830651.1| hypothetical protein PcarcW_04609 [Pectobacterium carotovorum subsp....
0.0 [1..283] [1..283]
gi|77957484 - gi|77957484|ref|ZP_00821539.1| COG1660: Predicted P-loop-containing kinase [Yersinia bercovieri ATCC...
0.0 [1..283] [1..283]

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Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLMIVSGRS GSGKSVALRA LEDMGFYCVD NLPVVLLPDL ARTLADRQIS AAVSIDVRNI  60
   61 PESPEIFEQA MNNLPGAFSP QLLFLDADRN TLIRRYSDTR RLHPLSSKNL SLESAIDKES 120
  121 DLLEPLRSRA DLIVDTSEMS VHELAEMLRT RLLG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.17
Match: 2iyqA
Description: No description for 2iyqA was found.

Predicted functions:

Term Confidence Notes
binding 1.48172144551427 bayes_pls_golite062009
catalytic activity 0.942640875796745 bayes_pls_golite062009
nucleic acid binding 0.00977334280765782 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [155-284]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRERELTMVF ESFGFKHGIP IDADYVFDVR FLPNPHWDPK LRPMTGLDKP VAAFLDRHTE  60
   61 VHNFIYQTRS YLELWLPMLE TNNRSYLTVA IGCTGGKHRS VYIAEQLADY FRSRGKNVQS 120
  121 RHRTLEKRKT 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 20.207608
Match: PF03668.6
Description: No description for PF03668.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.851 0.323 nucleotide binding c.23.5 Flavoproteins


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle