YRC Public Data Repository - Protein Structure Prediction

Protein:	YHBJ_ECOLI
Organism:	Escherichia coli
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHBJ_ECOLI.

Description	E-value	Query Range	Subject Range
Y571_PSEA6 - Nucleotide-binding protein Patl_0571 OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=...	438.0	[0..1]	[281..1]
Y285_ERWCT - UPF0042 nucleotide-binding protein ECA0285 OS=Erwinia carotovora subsp. atroseptica GN=ECA0285 PE=3 ... RAPZ_PECAS - RNase adapter protein RapZ OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rapZ ... RAPZ_PECCP - RNase adapter protein RapZ OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rapZ PE=... gi\|227114048 - gi\|227114048\|ref\|ZP_03827704.1\| hypothetical protein PcarbP_13829 [Pectobacterium carotovorum subsp.... gi\|227326627 - gi\|227326627\|ref\|ZP_03830651.1\| hypothetical protein PcarcW_04609 [Pectobacterium carotovorum subsp....	437.0	[0..1]	[284..1]
RAPZ_SHIDS - RNase adapter protein RapZ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rapZ PE=3 SV=1	435.0	[0..1]	[284..1]
gi\|77630529, gi\|... - gi\|77630529\|ref\|ZP_00793115.1\| COG1660: Predicted P-loop-containing kinase [Yersinia pseudotuberculo... gi\|77633092 - gi\|77633092\|ref\|ZP_00795244.1\| COG1660: Predicted P-loop-containing kinase [Yersinia pestis Angola] gi\|89102221 - gi\|89102221\|ref\|ZP_01174872.1\| COG1660: Predicted P-loop-containing kinase [Yersinia pestis biovar O...	434.0	[0..1]	[283..20]
RAPZ_ECOK1 - RNase adapter protein RapZ OS=Escherichia coli O1:K1 / APEC GN=rapZ PE=3 SV=1	433.0	[0..1]	[284..1]
gi\|950055, gi\|21... - gi\|950055\|emb\|CAA90684.1\| orfIV [Klebsiella pneumoniae], pir\|\|S60666 probable ATP-binding protein - ... RAPZ_KLEOX - RNase adapter protein RapZ OS=Klebsiella oxytoca GN=rapZ PE=3 SV=3	433.0	[0..1]	[283..1]
RAPZ_SALA4 - RNase adapter protein RapZ OS=Salmonella agona (strain SL483) GN=rapZ PE=3 SV=1 gi\|197241221, gi... - gi\|197262966\|ref\|ZP_03163040.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... RAPZ_SALPK - RNase adapter protein RapZ OS=Salmonella paratyphi A (strain AKU_12601) GN=rapZ PE=3 SV=1 RAPZ_SALDC - RNase adapter protein RapZ OS=Salmonella dublin (strain CT_02021853) GN=rapZ PE=3 SV=1 RAPZ_SALNS - RNase adapter protein RapZ OS=Salmonella newport (strain SL254) GN=rapZ PE=3 SV=1 YHBJ_SALCH - UPF0042 nucleotide-binding protein yhbJ OS=Salmonella choleraesuis GN=yhbJ PE=3 SV=1 RAPZ_SALHS - RNase adapter protein RapZ OS=Salmonella heidelberg (strain SL476) GN=rapZ PE=3 SV=1 gi\|194470337, gi... - gi\|194470337\|ref\|ZP_03076321.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... RAPZ_SALSV - RNase adapter protein RapZ OS=Salmonella schwarzengrund (strain CVM19633) GN=rapZ PE=3 SV=1 gi\|205337879, gi... - gi\|205337879\|gb\|EDZ24643.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YHBJ_SALPB - UPF0042 nucleotide-binding protein yhbJ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=y... gi\|205348469, gi... - gi\|205348469\|gb\|EDZ35100.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168463451, gi... - gi\|195633703\|gb\|EDX52117.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205343424, gi... - gi\|205343424\|gb\|EDZ30188.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205323223, gi... - gi\|205323223\|gb\|EDZ11062.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205327648, gi... - gi\|205327648\|gb\|EDZ14412.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168231934, gi... - gi\|205333839\|gb\|EDZ20603.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197289117, gi... - gi\|197289117\|gb\|EDY28486.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YHBJ_SALTY - UPF0042 nucleotide-binding protein yhbJ OS=Salmonella typhimurium GN=yhbJ PE=3 SV=1 gi\|213053142 - gi\|213053142\|ref\|ZP_03346020.1\| hypothetical protein Salmoneentericaenterica_09585 [Salmonella enter... gi\|213426633 - gi\|213426633\|ref\|ZP_03359383.1\| hypothetical protein SentesTyphi_14088 [Salmonella enterica subsp. e... gi\|238910117 - gi\|238910117\|ref\|ZP_04653954.1\| hypothetical protein SentesTe_03125 [Salmonella enterica subsp. ente... YHBJ_SALPA - UPF0042 nucleotide-binding protein yhbJ OS=Salmonella paratyphi A GN=yhbJ PE=3 SV=1 RAPZ_SALPC - RNase adapter protein RapZ OS=Salmonella paratyphi C (strain RKS4594) GN=rapZ PE=3 SV=1 gi\|200387031, gi... - gi\|200387031\|ref\|ZP_03213643.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|204319932, gi... - gi\|204931165\|ref\|ZP_03221959.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... RAPZ_SALG2 - RNase adapter protein RapZ OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rapZ PE=3 SV=1 RAPZ_SALEP - RNase adapter protein RapZ OS=Salmonella enteritidis PT4 (strain P125109) GN=rapZ PE=3 SV=1 RAPZ_SALPB - RNase adapter protein RapZ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rapZ PE=3 SV=1 YHBJ_SALCH - UPF0042 protein yhbJ OS=Salmonella choleraesuis GN=yhbJ PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yhbJ] [protein=hypothetical protein] [protein_id=YP_005239503.1] [location=3500704..3501558] YHBJ_SALTY - UPF0042 protein yhbJ OS=Salmonella typhimurium GN=yhbJ PE=3 SV=1 RAPZ_SALPA - RNase adapter protein RapZ OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rapZ PE=3 SV=1 RAPZ_SALTY - RNase adapter protein RapZ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rapZ P... RAPZ_SALCH - RNase adapter protein RapZ OS=Salmonella choleraesuis (strain SC-B67) GN=rapZ PE=3 SV=1	432.0	[0..1]	[283..1]
Y3352_SHESR - Nucleotide-binding protein Shewmr7_3352 OS=Shewanella sp. (strain MR-7) GN=Shewmr7_3352 PE=3 SV=1	432.0	[0..1]	[283..1]
RAPZ_YERE8 - RNase adapter protein RapZ OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 /... gi\|238793714, gi... - gi\|77978709\|ref\|ZP_00834134.1\| COG1660: Predicted P-loop-containing kinase [Yersinia intermedia ATCC...	432.0	[0..1]	[283..1]
gi\|166011383, gi... - gi\|166011383\|ref\|ZP_02232281.1\| P-loop ATPase protein family [Yersinia pestis biovar Antiqua str. E1... gi\|165937397, gi... - gi\|165937397\|ref\|ZP_02225960.1\| P-loop ATPase protein family [Yersinia pestis biovar Orientalis str.... gi\|167050071, gi... - gi\|167400703\|ref\|ZP_02306212.1\| P-loop ATPase protein family [Yersinia pestis biovar Antiqua str. UG... gi\|166206576, gi... - gi\|166211830\|ref\|ZP_02237865.1\| P-loop ATPase protein family [Yersinia pestis biovar Antiqua str. B4... RAPZ_YERPP - RNase adapter protein RapZ OS=Yersinia pestis (strain Pestoides F) GN=rapZ PE=3 SV=2 gi\|165928128, gi... - gi\|165928128\|ref\|ZP_02223960.1\| P-loop ATPase protein family [Yersinia pestis biovar Orientalis str.... RAPZ_YERPG - RNase adapter protein RapZ OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rapZ PE=3 SV=1 RAPZ_YERPA - RNase adapter protein RapZ OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rapZ PE=3 SV=1 RAPZ_YERPN - RNase adapter protein RapZ OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rapZ PE=3 SV=1 gi\|45443570, gi\|... - gi\|45443570\|ref\|NP_995109.1\| hypothetical protein YP_3840 [Yersinia pestis biovar Microtus str. 9100... gi\|21956826, gi\|... - gi\|22124078\|ref\|NP_667501.1\| hypothetical protein y0158 [Yersinia pestis KIM], gi\|21956826\|gb\|AAM837... gi\|16123728, gi\|... - gi\|218930596\|ref\|YP_002348471.1\| hypothetical protein YPO3586 [Yersinia pestis CO92], gi\|16123728\|re... RAPZ_YERPS - RNase adapter protein RapZ OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rapZ PE=3 S... RAPZ_YERPB - RNase adapter protein RapZ OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rapZ PE=3 SV... gi\|167054273, gi... - gi\|167426746\|ref\|ZP_02318499.1\| P-loop ATPase protein family [Yersinia pestis biovar Mediaevalis str... gi\|167420720, gi... - gi\|167420720\|ref\|ZP_02312473.1\| P-loop ATPase protein family [Yersinia pestis biovar Orientalis str.... RAPZ_YERPY - RNase adapter protein RapZ OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rapZ PE=3 S... gi\|167466502 - gi\|167466502\|ref\|ZP_02331206.1\| P-loop ATPase protein family [Yersinia pestis FV-1] gi\|149288996, gi... - gi\|153997359\|ref\|ZP_02022459.1\| hypothetical protein YPE_3808 [Yersinia pestis CA88-4125], gi\|149288... RAPZ_YERP3 - RNase adapter protein RapZ OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rapZ PE... RAPZ_YERPE - RNase adapter protein RapZ OS=Yersinia pestis GN=rapZ PE=3 SV=1 gi\|229899807, gi... - gi\|229899807\|ref\|ZP_04514948.1\| predicted protein with nucleoside triphosphate hydrolase domain [Yer... gi\|229836857, gi... - gi\|229836857\|ref\|ZP_04457022.1\| predicted protein with nucleoside triphosphate hydrolase domain [Yer... gi\|229695608, gi... - gi\|229839242\|ref\|ZP_04459401.1\| predicted protein with nucleoside triphosphate hydrolase domain [Yer... Y3529_YERPS - UPF0042 nucleotide-binding protein YPTB3529 OS=Yersinia pseudotuberculosis GN=YPTB3529 PE=3 SV=1	432.0	[0..1]	[283..1]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLMIVSGRS GSGKSVALRA LEDMGFYCVD NLPVVLLPDL ARTLADREIS AAVSIDVRNM  60
   61 PESPEIFEQA MSNLPDAFSP QLLFLDADRN TLIRRYSDTR RLHPLSSKNL SLESAIDKES 120
  121 DLLEPLRSRA DLIVDTSEMS VHELAEMLRT RLLGKRE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.18
Match:	2iyqA
Description:	No description for 2iyqA was found.

Predicted functions:

Term	Confidence	Notes
binding	1.48172144551427	bayes_pls_golite062009
catalytic activity	0.942640875796745	bayes_pls_golite062009
nucleic acid binding	0.00977334280765782	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [158-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RELTMVFESF GFKHGIPIDA DYVFDVRFLP NPHWDPKLRP MTGLDKPVAA FLDRHTEVHN  60
   61 FIYQTRSYLE LWLPMLETNN RSYLTVAIGC TGGKHRSVYI AEQLADYFRS RGKNVQSRHR 120
  121 TLEKRKP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.207608
Match:	PF03668.6
Description:	No description for PF03668.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.879	0.002	ATP binding	d.79.1	YjgF-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: