YRC Public Data Repository - Protein Structure Prediction

Protein:	YHAV_ECOLI
Organism:	Escherichia coli
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHAV_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|192959385, gi... - gi\|75239277\|ref\|ZP_00723248.1\| hypothetical protein EcolE1_01000348 [Escherichia coli E110019], gi\|1... gi\|75227543, gi\|... - gi\|75227543\|ref\|ZP_00714302.1\| hypothetical protein EcolB7_01004059 [Escherichia coli B7A], gi\|19116... gi\|218555700, gi... - gi\|218555700\|ref\|YP_002388613.1\| hypothetical protein ECIAI1_3278 [Escherichia coli IAI1], gi\|218362... gi\|75211079, gi\|... - gi\|75211079\|ref\|ZP_00711192.1\| hypothetical protein EcolB_01001876 [Escherichia coli B171], gi\|19442... gi\|157158522, gi... - gi\|75187936\|ref\|ZP_00701203.1\| hypothetical protein EcolE_01001178 [Escherichia coli E24377A], gi\|15... gi\|218353567, gi... - gi\|218696835\|ref\|YP_002404502.1\| hypothetical protein EC55989_3548 [Escherichia coli 55989], gi\|2183...	269.0	[0..1]	[154..1]
gi\|170018620, gi... - gi\|170018620\|ref\|YP_001723574.1\| hypothetical protein EcolC_0570 [Escherichia coli ATCC 8739], gi\|16... gi\|124525964, gi... - gi\|124525964\|ref\|ZP_01697969.1\| conserved hypothetical protein [Escherichia coli B], gi\|124502068\|gb... gi\|157068293, gi... - gi\|75197079\|ref\|ZP_00707149.1\| hypothetical protein EcolH_01002893 [Escherichia coli HS], gi\|1571626...	268.0	[0..1]	[154..1]
gi\|193062069, gi... - gi\|75260058\|ref\|ZP_00731336.1\| hypothetical protein EcolE2_01000457 [Escherichia coli E22], gi\|19306...	268.0	[0..1]	[154..1]
gi\|190907500, gi... - gi\|75240843\|ref\|ZP_00724741.1\| hypothetical protein EcolF_01002138 [Escherichia coli F11], gi\|191172... gi\|110643373, gi... - gi\|110643373\|ref\|YP_671103.1\| hypothetical protein ECP_3220 [Escherichia coli 536], gi\|110344965\|gb\|... YHAV_ECOL6 - Toxin YhaV OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yhaV PE=3 SV=1 gi\|227887854, gi... - gi\|227887854\|ref\|ZP_04005659.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783525...	268.0	[0..1]	[154..1]
gi\|93454376, gi\|... - gi\|94265137\|ref\|ZP_01288901.1\| conserved hypothetical protein [delta proteobacterium MLMS-1], gi\|934...	261.0	[0..4]	[151..8]
gi\|113473819, gi... - gi\|113473819\|ref\|YP_718082.1\| hypothetical protein pCAR3_141 [Sphingomonas sp. KA1], gi\|112821499\|db...	257.0	[0..5]	[151..10]
gi\|30249944, gi\|... - gi\|30249944\|ref\|NP_842014.1\| hypothetical protein NE1999 [Nitrosomonas europaea ATCC 19718], gi\|3013...	249.0	[0..4]	[151..8]
gi\|26988002, gi\|... - gi\|26988002\|ref\|NP_743427.1\| hypothetical protein PP_1267 [Pseudomonas putida KT2440], gi\|24982719\|g...	247.0	[0..4]	[150..8]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFPQRVNGW ALYAHPCFQE TYDALVAEVE TLKGKDPENY QRKAATKLLA VVHKVIEEHI  60
   61 TVNPSSPAFR HGKSLGSGKN KDWSRVKFGA GRYRLFFRYS EKEKVIILGW MNDENTLRTY 120
  121 GKKTDAYTVF SKMLKRGHPP ADWETLTRET EETH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.968
Match:	1wmiA
Description:	Crystal structure of archaeal RelE-RelB complex from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits