YRC Public Data Repository - Protein Structure Prediction

Protein:	YHAM_ECOLI
Organism:	Escherichia coli
Length:	436 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHAM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|104783406, gi... - gi\|95112393\|emb\|CAK17120.1\| L-serine deaminase I [Pseudomonas entomophila L48], gi\|104783406\|ref\|YP_... gi\|95112393 - gi\|95112393\|emb\|CAK17120.1\| L-serine deaminase I [Pseudomonas entomophila L48]	426.0	[0..13]	[430..5]
gi\|11350539 - pir\|\|B83341 L-serine dehydratase PA2443 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9948490, gi\|1... - gi\|9948490\|gb\|AAG05831.1\|AE004671_7 L-serine dehydratase [Pseudomonas aeruginosa PAO1], gi\|15597639\|... gi\|126194257, gi... - gi\|254240879\|ref\|ZP_04934201.1\| L-serine dehydratase [Pseudomonas aeruginosa 2192], gi\|194551864\|ref...	420.0	[0..13]	[430..5]
gi\|115585612, gi... - gi\|116050391\|ref\|YP_790792.1\| L-serine dehydratase [Pseudomonas aeruginosa UCBPP-PA14], gi\|115585612...	419.0	[0..13]	[430..5]
gi\|107101894 - gi\|107101894\|ref\|ZP_01365812.1\| hypothetical protein PaerPA_01002939 [Pseudomonas aeruginosa PACS2]	418.0	[0..13]	[430..16]
gi\|84327230 - gi\|84327230\|ref\|ZP_00975253.1\| COG1760: L-serine deaminase [Pseudomonas aeruginosa 2192]	418.0	[0..13]	[430..16]
gi\|84320820 - gi\|84320820\|ref\|ZP_00969188.1\| COG1760: L-serine deaminase [Pseudomonas aeruginosa C3719]	417.0	[0..13]	[430..22]
gi\|47574891 - gi\|47574891\|ref\|ZP_00244926.1\| COG1760: L-serine deaminase [Rubrivivax gelatinosus PM1] gi\|124266622, gi... - gi\|124266622\|ref\|YP_001020626.1\| L-serine ammonia-lyase [Methylibium petroleiphilum PM1], gi\|1242593...	417.0	[0..13]	[430..5]
gi\|151939073, gi... - gi\|75855851\|ref\|ZP_00763491.1\| COG3681: Uncharacterized conserved protein [Vibrio sp. Ex25], gi\|2542...	416.0	[0..6]	[433..1]
gi\|121586572, gi... - gi\|121586572\|ref\|ZP_01676358.1\| L-serine dehydratase 1 [Vibrio cholerae 2740-80], gi\|121549251\|gb\|EA... gi\|124116699, gi... - gi\|153212321\|ref\|ZP_01948109.1\| L-serine dehydratase 1 [Vibrio cholerae 1587], gi\|124116699\|gb\|EAY35... gi\|153222924, gi... - gi\|153222924\|ref\|ZP_01953531.1\| L-serine dehydratase 1 [Vibrio cholerae MAK 757], gi\|124118511\|gb\|EA... gi\|227009359, gi... - gi\|227081471\|ref\|YP_002810022.1\| L-serine dehydratase [Vibrio cholerae M66-2], gi\|227009359\|gb\|ACP05... gi\|153823528, gi... - gi\|229511216\|ref\|ZP_04400695.1\| L-serine dehydratase [Vibrio cholerae B33], gi\|229351181\|gb\|EEO16122... gi\|229357337, gi... - gi\|229505114\|ref\|ZP_04394624.1\| L-serine dehydratase [Vibrio cholerae BX 330286], gi\|229357337\|gb\|EE... gi\|229345049, gi... - gi\|229518334\|ref\|ZP_04407778.1\| L-serine dehydratase [Vibrio cholerae RC9], gi\|229345049\|gb\|EEO10023... gi\|229529618, gi... - gi\|229529618\|ref\|ZP_04419008.1\| L-serine dehydratase [Vibrio cholerae 12129(1)], gi\|229333392\|gb\|EEN... gi\|229608118, gi... - gi\|229608118\|ref\|YP_002878766.1\| L-serine dehydratase [Vibrio cholerae MJ-1236], gi\|229370773\|gb\|ACQ... gi\|147675128, gi... - gi\|75826690\|ref\|ZP_00756125.1\| COG1760: L-serine deaminase [Vibrio cholerae O395], gi\|227117767\|ref\|... gi\|75814392 - gi\|75814392\|ref\|ZP_00744987.1\| COG1760: L-serine deaminase [Vibrio cholerae V52] gi\|15641313, gi\|... - gi\|9655788\|gb\|AAF94459.1\| L-serine dehydratase 1 [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|... gi\|11269008 - pir\|\|H82217 L-serine dehydratase 1 VC1300 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|153830044, gi... - gi\|153830044\|ref\|ZP_01982711.1\| L-serine dehydratase 1 [Vibrio cholerae 623-39], gi\|148874484\|gb\|EDL... gi\|149739599, gi... - gi\|153826587\|ref\|ZP_01979254.1\| L-serine dehydratase 1 [Vibrio cholerae MZO-2], gi\|149739599\|gb\|EDM5... gi\|125617913, gi... - gi\|75829228\|ref\|ZP_00758539.1\| COG1760: L-serine deaminase [Vibrio cholerae MO10], gi\|254848422\|ref\|...	416.0	[0..13]	[432..4]
Y2173_VIBPA - UPF0597 protein VP2173 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP2173 PE=... Y2173_VIBPA - UPF0597 protein VP2173 OS=Vibrio parahaemolyticus GN=VP2173 PE=3 SV=1	416.0	[0..6]	[433..1]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDSTLNPLW QRYILAVQEE VKPALGCTEP ISLALAAAVA AAELEGPVER VEAWVSPNLM  60
   61 KNGLGVTVPG TGMVGLPIAA ALGALGGNAN AGLEVLKDAT AQAIADAKAL LAAGKVSVKI 120
  121 QEPCDEILFS RAKVWNGEKW ACVTIVGGHT NIVHIETH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.221849
Match:	2iqqA
Description:	No description for 2iqqA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.0279387044161	bayes_pls_golite062009
L-serine ammonia-lyase activity	0.308592358863687	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [159-436]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGVVFTQQAC VAEGEQESPL TVLSRTTLAE ILKFVNEVPF AAIRFILDSA KLNCALSQEG  60
   61 LSGKWGLHIG ATLEKQCERG LLAKDLSSSI VIRTSAASDA RMGGATLPAM SNSGSGNQGI 120
  121 TATMPVVVVA EHFGADDERL ARALMLSHLS AIYIHNQLPR LSALCAATTA AMGAAAGMAW 180
  181 LVDGRYETIS MAISSMIGDV SGMICDGASN SCAMKVSTSA SAAWKAVLMA LDDTAVTGNE 240
  241 GIVAHDVEQS IANLCALASH SMQQTDRQII EIMASKAR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.08
Match:	2hp0A
Description:	No description for 2hp0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: