YRC Public Data Repository - Protein Structure Prediction

Protein:	YHAI_ECOLI
Organism:	Escherichia coli
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHAI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|90411793, gi\|... - gi\|90411793\|ref\|ZP_01219802.1\| hypothetical protein P3TCK_18107 [Photobacterium profundum 3TCK], gi\|...	141.0	[0..1]	[118..1]
gi\|89891526, gi\|... - gi\|89891526\|ref\|ZP_01203031.1\| conserved hypothetical protein [Flavobacteria bacterium BBFL7], gi\|89...	136.0	[0..1]	[115..31]
gi\|67938793, gi\|... - gi\|67938793\|ref\|ZP_00531312.1\| Protein of unknown function DUF805 [Chlorobium phaeobacteroides BS1],...	135.0	[0..1]	[115..1]
gi\|91074106, gi\|... - gi\|91212532\|ref\|YP_542518.1\| hypothetical protein UTI89_C3541 [Escherichia coli UTI89], gi\|91074106\|... gi\|237706136, gi... - gi\|237706136\|ref\|ZP_04536617.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|110806988, gi... - gi\|110806988\|ref\|YP_690508.1\| putative cytochrome [Shigella flexneri 5 str. 8401], gi\|110616536\|gb\|A...	132.0	[0..1]	[114..8]
gi\|26249691, gi\|... - gi\|26249691\|ref\|NP_755731.1\| hypothetical protein c3862 [Escherichia coli CFT073], gi\|26110119\|gb\|AA...	132.0	[0..1]	[114..8]
gi\|78046869, gi\|... - gi\|78046869\|ref\|YP_363044.1\| hypothetical protein XCV1313 [Xanthomonas campestris pv. vesicatoria st...	132.0	[0..1]	[114..1]
gi\|48851277, gi\|... - gi\|87199170\|ref\|YP_496427.1\| hypothetical protein Saro_1148 [Novosphingobium aromaticivorans DSM 124...	132.0	[0..1]	[116..19]
gi\|28850744, gi\|... - gi\|28867510\|ref\|NP_790129.1\| hypothetical protein PSPTO_0278 [Pseudomonas syringae pv. tomato str. D... tr\|Q88AV5\|Q88AV5... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_0278 PE=4 SV=1	132.0	[0..2]	[114..42]
gi\|193062004, gi... - gi\|75260039\|ref\|ZP_00731317.1\| COG3152: Predicted membrane protein [Escherichia coli E22], gi\|193062... gi\|193067349, gi... - gi\|75239323\|ref\|ZP_00723294.1\| COG3152: Predicted membrane protein [Escherichia coli E110019], gi\|19... gi\|191166842, gi... - gi\|75229976\|ref\|ZP_00716489.1\| COG3152: Predicted membrane protein [Escherichia coli B7A], gi\|191166... gi\|194414170, gi... - gi\|75211060\|ref\|ZP_00711173.1\| COG3152: Predicted membrane protein [Escherichia coli B171], gi\|19442... gi\|157155090, gi... - gi\|75187917\|ref\|ZP_00701184.1\| COG3152: Predicted membrane protein [Escherichia coli E24377A], gi\|15... gi\|209920581, gi... - gi\|209920581\|ref\|YP_002294665.1\| putative cytochrome [Escherichia coli SE11], gi\|209913840\|dbj\|BAG78... gi\|218362444, gi... - gi\|218555676\|ref\|YP_002388589.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218353544, gi... - gi\|218696812\|ref\|YP_002404479.1\| conserved hypothetical protein; putative inner membrane protein [Es...	132.0	[0..1]	[118..1]
gi\|89072996, gi\|... - gi\|89072996\|ref\|ZP_01159543.1\| putative inner membrane protein [Photobacterium sp. SKA34], gi\|890512...	131.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQWYLSVLKN YVGFSGRARR KEYWMFTLIN AIVGAIINVI QLILGLELPY LSMLYLLATF  60
   61 LPVLALAIRR LHDTDRSGAW ALLFFVPFIG WLVLLVFFCT EGTSGSNRYG NDPKFGSN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	53.657577
Match:	PF05656.5
Description:	No description for PF05656.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits