YRC Public Data Repository - Protein Structure Prediction

Protein:	YH83_SYNY3, Y178...
Organism:	Synechocystis sp. PCC 6803
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YH83_SYNY3, Y178....

Description	E-value	Query Range	Subject Range
gi\|15073164 - gi\|15073164\|emb\|CAC41672.1\| Probable MFS permease [Sinorhizobium meliloti 1021] gi\|15963988 - gi\|15963988\|ref\|NP_384341.1\| putative transport transmembrane protein [Sinorhizobium meliloti 1021]	106.0	[0..12]	[147..400]
gi\|113725939, gi... - gi\|150398623\|ref\|YP_001329090.1\| protein of unknown function DUF894 DitE [Sinorhizobium medicae WSM4...	105.0	[0..12]	[147..400]
gi\|55247162, gi\|... - gi\|57965636\|ref\|XP_561258.1\| ENSANGP00000026009 [Anopheles gambiae str. PEST], gi\|55247162\|gb\|EAL423...	101.0	[0..46]	[144..1]
gi\|69276420, gi\|... - gi\|69276420\|ref\|ZP_00612014.1\| protein of unknown function DUF894:Bacterial protein of unknown funct...	99.0	[0..12]	[147..390]
gi\|192286296, gi... - gi\|192292547\|ref\|YP_001993152.1\| Antibiotic biosynthesis monooxygenase [Rhodopseudomonas palustris T... RPA3659 - RPA3659 DUF176 4132804:4133103 reverse MW:10962	98.0	[0..49]	[146..1]
gi\|25522946, gi\|... - pir\|\|AF2587 MFS permease [imported] - Agrobacterium tumefaciens (strain C58, Dupont), pir\|\|F97369 h... gi\|17934010, gi\|... - gi\|17934010\|ref\|NP_530800.1\| MFS permease [Agrobacterium tumefaciens str. C58], gi\|17738409\|gb\|AAL41...	98.0	[0..14]	[147..393]
gi\|115254543, gi... - gi\|116249895\|ref\|YP_765733.1\| putative transmembrane transport protein [Rhizobium leguminosarum bv. ...	96.0	[0..13]	[147..408]
gi\|37522426, gi\|... - gi\|37522426\|ref\|NP_925803.1\| hypothetical protein gsl2857 [Gloeobacter violaceus PCC 7421], gi\|35213...	96.0	[0..46]	[140..1]
gi\|37678340, gi\|... - gi\|37678340\|ref\|NP_932949.1\| hypothetical protein VV0156 [Vibrio vulnificus YJ016], gi\|37197079\|dbj\|...	95.0	[0..49]	[142..1]

Back

Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRADFFLSDN RAALLKRGLT IILSFLVFTS IFLLPSPSLA EDVKGADDPI VVAGNIKVKP  60
   61 DKKEEFIALS QTFIEPSRSE PGCISYSFYE DETEDNSFLF FEVWRNRAAL DYHFQTPYFH 120
  121 EFVEKSPDLL AKPAEIKIYK IAETQTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.045757
Match:	1y0hA
Description:	Structure of Rv0793 from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits