YRC Public Data Repository - Protein Structure Prediction

Protein:	YGIL_ECOLI
Organism:	Escherichia coli
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGIL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|192959191, gi... - gi\|193067234\|ref\|ZP_03048202.1\| fimbrial protein [Escherichia coli E110019], gi\|192959191\|gb\|EDV8962... gi\|74313580, gi\|... - gi\|74313580\|ref\|YP_311999.1\| putative fimbrial protein [Shigella sonnei Ss046], gi\|73857057\|gb\|AAZ89...	152.0	[0..1]	[183..1]
gi\|81246711, gi\|... - gi\|82545300\|ref\|YP_409247.1\| putative fimbrial protein [Shigella boydii Sb227], gi\|81246711\|gb\|ABB67...	151.0	[0..1]	[181..1]
gi\|75239381 - gi\|75239381\|ref\|ZP_00723352.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli E1100...	139.0	[0..15]	[183..1]
gi\|75511272 - gi\|75511272\|ref\|ZP_00733970.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli 53638... gi\|75197000 - gi\|75197000\|ref\|ZP_00707070.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli HS] gi\|83587516 - gi\|83587516\|ref\|ZP_00926143.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli 101-1...	138.0	[0..15]	[183..1]
gi\|75227966 - gi\|75227966\|ref\|ZP_00714661.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli B7A] gi\|75212319 - gi\|75212319\|ref\|ZP_00712343.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli B171] gi\|75187858 - gi\|75187858\|ref\|ZP_00701125.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli E2437... gi\|75259981 - gi\|75259981\|ref\|ZP_00731259.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli E22]	138.0	[0..15]	[183..1]
gi\|26110030, gi\|... - gi\|26249622\|ref\|NP_755662.1\| putative fimbrial protein [Escherichia coli CFT073], gi\|26110030\|gb\|AAN... gi\|226899237, gi... - gi\|237706197\|ref\|ZP_04536678.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|218691347, gi... - gi\|218691347\|ref\|YP_002399559.1\| putative fimbrial protein [Escherichia coli ED1a], gi\|218428911\|emb... gi\|218366898, gi... - gi\|218560129\|ref\|YP_002393042.1\| putative fimbrial protein [Escherichia coli S88], gi\|218366898\|emb\|... gi\|227835159, gi... - gi\|227887763\|ref\|ZP_04005568.1\| fimbrial protein [Escherichia coli 83972], gi\|227835159\|gb\|EEJ45625.... gi\|115514481, gi... - gi\|117625357\|ref\|YP_855132.1\| putative fimbrial protein [Escherichia coli APEC O1], gi\|115514481\|gb\|... gi\|91074045, gi\|... - gi\|91212471\|ref\|YP_542457.1\| putative fimbrial protein [Escherichia coli UTI89], gi\|91074045\|gb\|ABE0...	138.0	[0..3]	[183..1]
gi\|16132136, gi\|... - gb\|AAC77271.1\| fimbrial protein; fimbrial protein, internal segment [Escherichia coli K12], gi\|1613... gi\|537156\|gb\|AAA... - fimI [Escherichia coli] gi\|537156, gi\|13... - gi\|537156\|gb\|AAA97211.1\| fimI [Escherichia coli], pir\|\|S56540 fimI protein - Escherichia coli (strai...	137.0	[0..1]	[183..37]
gi\|117626623, gi... - gi\|117626623\|ref\|YP_859946.1\| FimI fimbrial protein [Escherichia coli APEC O1], gi\|115515747\|gb\|ABJ0...	136.0	[0..1]	[183..42]
gi\|209749352, gi... - pir\|\|B91288 fimbrial protein [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952),... gi\|15834528, gi\|... - gi\|15834528\|ref\|NP_313301.1\| FimI [Escherichia coli O157:H7], gi\|13364752\|dbj\|BAB38697.1\| fimbrial p... gi\|15834528, gi\|... - gi\|15834528\|ref\|NP_313301.1\| FimI [Escherichia coli O157:H7 str. Sakai], gi\|13364752\|dbj\|BAB38697.1\|...	136.0	[0..1]	[183..37]
gi\|91213960, gi\|... - gi\|91213960\|ref\|YP_543946.1\| FimI fimbrial protein [Escherichia coli UTI89], gi\|91075534\|gb\|ABE10415...	136.0	[0..1]	[183..37]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAFKKSLLV AGVAMILSNN VFADEGHGIV KFKGEVISAP CSIKPGDEDL TVNLGEVADT  60
   61 VLKSDQKSLA EPFTIHLQDC MLSQGGTTYS KAKVTFTTAN TMTGQSDLLK NTKETEIGGA 120
  121 TGVGVRILDS QSGEVTLGTP VVITFNNTNS YQELNFKARM ESPSKDATPG NVYAQADYKI 180
  181 AYE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	2uy6B
Description:	No description for 2uy6B was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits