YRC Public Data Repository - Protein Structure Prediction

Protein:	YGIF_ECOLI
Organism:	Escherichia coli
Length:	433 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGIF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77959520 - gi\|77959520\|ref\|ZP_00823539.1\| COG3025: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	370.0	[0..1]	[433..14]
gi\|77962300 - gi\|77962300\|ref\|ZP_00826122.1\| COG3025: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	363.0	[0..1]	[429..14]
gi\|229842909, gi... - gi\|229842909\|ref\|ZP_04463061.1\| predicted adenylate cyclase [Yersinia pestis biovar Orientalis str. ... gi\|150260316, gi... - gi\|150260316\|ref\|ZP_01917044.1\| hypothetical protein YPE_2616 [Yersinia pestis CA88-4125], gi\|149289... gi\|145209442, gi... - gi\|145597746\|ref\|YP_001161822.1\| hypothetical protein YPDSF_0436 [Yersinia pestis Pestoides F], gi\|1... gi\|45437596, gi\|... - gi\|45442730\|ref\|NP_994269.1\| hypothetical protein YP_2967 [Yersinia pestis biovar Microtus str. 9100... gi\|25367810 - pir\|\|AG0080 conserved hypothetical protein YPO0652 [imported] - Yersinia pestis (strain CO92) gi\|218927845, gi... - gi\|218927845\|ref\|YP_002345720.1\| hypothetical protein YPO0652 [Yersinia pestis CO92], gi\|16120977\|re... gi\|51597707, gi\|... - gi\|51597707\|ref\|YP_071898.1\| hypothetical protein YPTB3409 [Yersinia pseudotuberculosis IP 32953], g... Q665V1\|Q665V1_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|89101988, gi\|... - gi\|89101988\|ref\|ZP_01174661.1\| COG3025: Uncharacterized conserved protein [Yersinia pestis biovar Or... gi\|108809129, gi... - gi\|108809129\|ref\|YP_653045.1\| hypothetical protein YPA_3138 [Yersinia pestis Antiqua], gi\|108781042\|... gi\|170022894, gi... - gi\|170022894\|ref\|YP_001719399.1\| adenylate cyclase [Yersinia pseudotuberculosis YPIII], gi\|169749428... gi\|167470524 - gi\|167470524\|ref\|ZP_02335228.1\| adenylate cyclase [Yersinia pestis FV-1] gi\|186896850, gi... - gi\|186896850\|ref\|YP_001873962.1\| adenylate cyclase [Yersinia pseudotuberculosis PB1/+], gi\|186699876... gi\|77636074, gi\|... - gi\|77636074\|ref\|ZP_00798151.1\| COG3025: Uncharacterized conserved protein [Yersinia pestis Angola], ... gi\|77630414, gi\|... - gi\|77630414\|ref\|ZP_00793000.1\| COG3025: Uncharacterized conserved protein [Yersinia pseudotuberculos... gi\|165925022, gi... - gi\|165925022\|ref\|ZP_02220854.1\| adenylate cyclase [Yersinia pestis biovar Orientalis str. F1991016],... gi\|166211945, gi... - gi\|166211945\|ref\|ZP_02237980.1\| adenylate cyclase [Yersinia pestis biovar Antiqua str. B42003004], g... gi\|165992367, gi... - gi\|166009028\|ref\|ZP_02229926.1\| adenylate cyclase [Yersinia pestis biovar Antiqua str. E1979001], gi... gi\|167419351, gi... - gi\|167419351\|ref\|ZP_02311104.1\| adenylate cyclase [Yersinia pestis biovar Orientalis str. MG05-1020]... gi\|229837331, gi... - gi\|229837331\|ref\|ZP_04457494.1\| predicted adenylate cyclase [Yersinia pestis Pestoides A], gi\|229705... gi\|167051978, gi... - gi\|167399474\|ref\|ZP_02304998.1\| adenylate cyclase [Yersinia pestis biovar Antiqua str. UG05-0454], g... gi\|229840543, gi... - gi\|229840543\|ref\|ZP_04460702.1\| predicted adenylate cyclase [Yersinia pestis biovar Orientalis str. ...	362.0	[0..1]	[433..1]
gi\|77976390 - gi\|77976390\|ref\|ZP_00831882.1\| COG3025: Uncharacterized conserved protein [Yersinia intermedia ATCC ...	361.0	[0..1]	[429..14]
gi\|157080018, gi... - gi\|75187864\|ref\|ZP_00701131.1\| COG3025: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|218696758, gi... - gi\|218696758\|ref\|YP_002404425.1\| putative adenylate cyclase [Escherichia coli 55989], gi\|218353490\|e...	359.0	[0..1]	[433..1]
gi\|24114354, gi\|... - gi\|24114354\|ref\|NP_708864.1\| hypothetical protein SF3095 [Shigella flexneri 2a str. 301], gi\|2405351... gi\|30064402, gi\|... - gi\|30064402\|ref\|NP_838573.1\| hypothetical protein S3300 [Shigella flexneri 2a str. 2457T], gi\|300426...	358.0	[0..1]	[433..1]
gi\|26249633, gi\|... - gi\|26249633\|ref\|NP_755673.1\| hypothetical protein c3802 [Escherichia coli CFT073], gi\|26110061\|gb\|AA...	357.0	[0..1]	[433..10]
gi\|157162527, gi... - gi\|75197007\|ref\|ZP_00707077.1\| COG3025: Uncharacterized conserved protein [Escherichia coli HS], gi\|...	356.0	[0..1]	[433..1]
gi\|188493955, gi... - gi\|75511262\|ref\|ZP_00733960.1\| COG3025: Uncharacterized conserved protein [Escherichia coli 53638], ...	355.0	[0..1]	[433..1]
gi\|82778387, gi\|... - gi\|82778387\|ref\|YP_404736.1\| hypothetical protein SDY_3237 [Shigella dysenteriae Sd197], gi\|81242535...	355.0	[0..1]	[433..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQEIELKFI VNHSAVEALR DHLNTLGGEH HDPVQLLNIY YETPDNWLRG HDMGLRIRGE  60
   61 NGRYEMTMKV AGRVTGGLHQ RPEYNVALSE PTLDLAQLPT EVWPNGELPA DLASRVQPLF 120
  121 STDFYREKWL VAVDGSQIEI ALDQGEVKAG EFAEPICELE LELLSGDTRA VLKLANQLVS 180
  181 QTGLRQGSLS KAARGYHLAQ G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.045757
Match:	2gfgA
Description:	No description for 2gfgA was found.

Predicted Domain #2

Region A:
Residues: [202-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPAREIKPTT ILHVAAKADV EQGLEAALEL ALAQWQYHEE LWVRGNDAAK EQVLAAISLV  60
   61 RHTLMLFGGI VPRKASTHLR DLLTQCEATI ASAV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [296-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAVTAVYSTE TAMAKLALTE WLVSKAWQPF LDAKAQGKIS DSFKRFADIH LSRHAAELKS  60
   61 VFCQPLGDRY RDQLPRLTRD IDSILLLAGY YDPVVAQAWL ENWQGLHHAI ATGQRIEIEH 120
  121 FRNEANNQEP FWLHSGKR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits