YRC Public Data Repository - Protein Structure Prediction

Protein:	YGHQ_ECOLI
Organism:	Escherichia coli
Length:	355 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGHQ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|23485091 - gi\|23485091\|gb\|EAA20203.1\| Virulence factor MVIN, putative [Plasmodium yoelii yoelii] gi\|82913424 - gi\|82913424\|ref\|XP_728638.1\| virulence factor MVIN [Plasmodium yoelii yoelii str. 17XNL]	189.0	[0..28]	[344..1]
gi\|111153730, gi... - gi\|111226198\|ref\|YP_716992.1\| hypothetical protein FRAAL6865 [Frankia alni ACN14a], gi\|111153730\|emb...	171.0	[0..8]	[354..602]
gi\|68197777, gi\|... - gi\|68234608\|ref\|ZP_00573679.1\| Virulence factor MVIN-like [Frankia sp. EAN1pec], gi\|68197777\|gb\|EAN1...	158.0	[0..18]	[354..1450]
gi\|628539 - gi\|628539\|pir\|\|S40176 ExoT protein - Rhizobium meliloti	146.0	[0..16]	[355..8]
gi\|25029487, gi\|... - gi\|25029487\|ref\|NP_739541.1\| hypothetical protein CE2931 [Corynebacterium efficiens YS-314], gi\|2349...	134.0	[0..18]	[355..204]
gi\|19888338, gi\|... - gi\|20095062\|ref\|NP_614909.1\| membrane protein implicated in protein export [Methanopyrus kandleri AV...	133.0	[0..17]	[355..5]
gi\|84372313, gi\|... - gi\|84488994\|ref\|YP_447226.1\| polysaccharide biosynthesis protein [Methanosphaera stadtmanae DSM 3091...	131.0	[0..16]	[355..3]
gi\|88698713, gi\|... - gi\|88707063\|ref\|ZP_01104759.1\| Virulence factor mviN-like protein [gamma proteobacterium KT 71], gi\|...	129.0	[0..18]	[344..13]
gi\|67676718, gi\|... - gi\|92112612\|ref\|YP_572540.1\| integral membrane protein MviN [Chromohalobacter salexigens DSM 3043], ...	128.0	[0..18]	[344..23]
gi\|83364164, gi\|... - gi\|83374447\|ref\|ZP_00919219.1\| similar to Membrane protein involved in the export of O-antigen and t...	128.0	[0..11]	[354..277]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFNIKHWF ADGAFRTIIR NSAWLGSSNV VSALLGLLAL SCAGKGMTPA MFGVLVIVQS  60
   61 YAKSISDFIK FQTWQLVVQY GTPALTNNNP QQFRNVVSFS FSLDIVSGAV AIVGGIALLP 120
  121 FLSHSLGLDD QSFWLAALYC TLIPSMASST PTGILRAVDR FDLIAVQQAT KPFLRAAGSV 180
  181 VAWYFDF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [188-355]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFAGFVIAWY VSNLVGGTMY WWFAARELRR RNIHNAFKLN LFESARYIKG AWSFVWSTNI  60
   61 AHSIWSARNS CSTVLVGIVL GPAAAGLFKI AMTFFDAAGT PAGLLGKSFY PEVMRLDPRT 120
  121 TRPWLLGVKS GLLAGGIGIL VALAVLIVGK PLISLVFGVK YLEAYDLI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits