YRC Public Data Repository - Protein Structure Prediction

Protein:	YGHG_ECOLI
Organism:	Escherichia coli
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGHG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91188903, gi\|... - gi\|91226940\|ref\|ZP_01261537.1\| hypothetical protein V12G01_16187 [Vibrio alginolyticus 12G01], gi\|91...	187.0	[0..9]	[135..2]
gi\|75853849, gi\|... - gi\|75853849\|ref\|ZP_00761600.1\| hypothetical protein VEx2w_01003984 [Vibrio sp. Ex25], gi\|116183382\|r...	186.0	[0..9]	[135..2]
gi\|17223824 - gi\|17223824\|gb\|AAL10691.1\| hypothetical lipoprotein [Escherichia coli]	185.0	[0..1]	[136..1]
gi\|47155037 - gi\|47155037\|emb\|CAE85236.1\| YghG protein [Escherichia coli] gi\|110643202, gi... - gi\|110643202\|ref\|YP_670932.1\| lipoprotein [Escherichia coli 536], gi\|110344794\|gb\|ABG71031.1\| hypoth... gi\|91073953, gi\|... - gi\|91212379\|ref\|YP_542365.1\| lipoprotein [Escherichia coli UTI89], gi\|91073953\|gb\|ABE08834.1\| hypoth... gi\|218691257, gi... - gi\|218691257\|ref\|YP_002399469.1\| hypothetical protein ECED1_3614 [Escherichia coli ED1a], gi\|2184288... gi\|218560040, gi... - gi\|218560040\|ref\|YP_002392953.1\| hypothetical protein ECS88_3346 [Escherichia coli S88], gi\|21836680... gi\|115514395, gi... - gi\|117625271\|ref\|YP_854410.1\| hypothetical protein APECO1_3456 [Escherichia coli APEC O1], gi\|115514... gi\|190907882, gi... - gi\|191171847\|ref\|ZP_03033393.1\| putative lipoprotein [Escherichia coli F11], gi\|190907882\|gb\|EDV6747... gi\|237706289, gi... - gi\|237706289\|ref\|ZP_04536770.1\| lipoprotein [Escherichia sp. 3_2_53FAA], gi\|226899329\|gb\|EEH85588.1\|...	183.0	[0..1]	[136..1]
gi\|28806965 - gi\|28806965\|dbj\|BAC60236.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28806965, gi\|... - gi\|28898747\|ref\|NP_798352.1\| hypothetical protein VP1973 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|153840210, gi... - gi\|153840210\|ref\|ZP_01992877.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|...	179.0	[0..9]	[135..2]
gi\|153221778, gi... - gi\|153221778\|ref\|ZP_01952663.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241194... gi\|121548798, gi... - gi\|121586963\|ref\|ZP_01676742.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215487... gi\|125618580, gi... - gi\|254848822\|ref\|ZP_05238172.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254844527\|... gi\|153800968, gi... - gi\|153800968\|ref\|ZP_01955554.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124123438... gi\|227081852, gi... - gi\|227081852\|ref\|YP_002810403.1\| hypothetical protein VCM66_1643 [Vibrio cholerae M66-2], gi\|2270097... gi\|9656221, gi\|1... - gi\|9656221\|gb\|AAF94853.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|126520625, gi... - gi\|153821827\|ref\|ZP_01974494.1\| conserved hypothetical protein [Vibrio cholerae B33], gi\|126520625\|g... gi\|11354636 - pir\|\|D82167 conserved hypothetical protein VC1703 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|153817182, gi... - gi\|153817182\|ref\|ZP_01969849.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651...	165.0	[0..9]	[133..34]
gi\|75831039, gi\|... - gi\|75831039\|ref\|ZP_00760307.1\| COG0668: Small-conductance mechanosensitive channel [Vibrio cholerae ... gi\|75827056 - gi\|75827056\|ref\|ZP_00756491.1\| COG0668: Small-conductance mechanosensitive channel [Vibrio cholerae ...	164.0	[0..9]	[133..3]
gi\|116215312, gi... - gi\|75821969\|ref\|ZP_00751698.1\| hypothetical protein VchoR_01002730 [Vibrio cholerae RC385], gi\|11621...	163.0	[0..9]	[133..3]
gi\|75196927 - gi\|75196927\|ref\|ZP_00706997.1\| hypothetical protein EcolH_01002739 [Escherichia coli HS]	163.0	[0..15]	[136..1]
tr\|A0A085TBE4\|A0... - Uncharacterized protein OS=Vibrio cholerae GN=DN30_1107 PE=4 SV=1 gi\|75820142, gi\|... - gi\|75820142\|ref\|ZP_00750197.1\| COG0668: Small-conductance mechanosensitive channel [Vibrio cholerae ...	162.0	[0..9]	[133..3]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKQMPGRV LISLLLSVTG LLSGCASHNE NASLLAKKQA QNISQNLPIK SAGYTLVLAQ  60
   61 SSGTTVKMTI ISEAGTQTTQ TPDAFLTSYQ RQMCADPTVK LMITEGINYS ITINDTRTGN 120
  121 QYQRKLDRTT CGIVKA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits