YRC Public Data Repository - Protein Structure Prediction

Protein:	YGGE_ECOLI
Organism:	Escherichia coli
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGGE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75241285, gi\|... - gi\|75241285\|ref\|ZP_00725147.1\| COG2968: Uncharacterized conserved protein [Escherichia coli F11], gi...	211.0	[0..1]	[246..1]
gi\|91212298, gi\|... - gi\|91212298\|ref\|YP_542284.1\| hypothetical protein UTI89_C3305 [Escherichia coli UTI89], gi\|91073872\|... gi\|218366678, gi... - gi\|218559909\|ref\|YP_002392822.1\| hypothetical protein ECS88_3198 [Escherichia coli S88], gi\|21836667... gi\|26249335, gi\|... - gi\|26249335\|ref\|NP_755375.1\| hypothetical protein c3500 [Escherichia coli CFT073], gi\|26109743\|gb\|AA... gi\|237706433, gi... - gi\|237706433\|ref\|ZP_04536914.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	210.0	[0..1]	[246..1]
gi\|78036915, gi\|... - gi\|78048485\|ref\|YP_364660.1\| putative outer membrane protein [Xanthomonas campestris pv. vesicatoria...	199.0	[0..3]	[232..6]
gi\|117625147, gi... - gi\|117625147\|ref\|YP_854135.1\| hypothetical protein APECO1_3611 [Escherichia coli APEC O1], gi\|115514...	199.0	[0..12]	[246..1]
gi\|21243499, gi\|... - gi\|21243499\|ref\|NP_643081.1\| outer membrane protein [Xanthomonas axonopodis pv. citri str. 306], gi\|...	198.0	[0..3]	[232..6]
gi\|110634423, gi... - gi\|69275357\|ref\|ZP_00611269.1\| Protein of unknown function DUF541 [Mesorhizobium sp. BNC1], gi\|68193...	198.0	[0..2]	[233..3]
gi\|86282639, gi\|... - gi\|86358537\|ref\|YP_470429.1\| hypothetical protein RHE_CH02935 [Rhizobium etli CFN 42], gi\|86282639\|g...	196.0	[0..5]	[233..12]
gi\|110806822, gi... - gi\|110806822\|ref\|YP_690342.1\| hypothetical protein SFV_2968 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|75178818 - gi\|75178818\|ref\|ZP_00698854.1\| COG2968: Uncharacterized conserved protein [Shigella boydii BS512]	196.0	[0..12]	[246..1]
gi\|110643066, gi... - gi\|110643066\|ref\|YP_670796.1\| hypothetical protein ECP_2911 [Escherichia coli 536], gi\|110344658\|gb\|...	195.0	[0..17]	[246..1]
gi\|10312106 - gi\|10312106\|gb\|AAG16660.1\|AF242532_1 Bp26 [Brucella pinnipediae] gi\|54695158 - gi\|54695158\|dbj\|BAD67161.1\| outer membrane protein Bp26 [Brucella sp. JM13/00] gi\|225617083, gi... - gi\|225627920\|ref\|ZP_03785956.1\| Protein of unknown function DUF541 [Brucella ceti str. Cudo], gi\|225... gi\|10312108, gi\|... - gi\|10312110\|gb\|AAG16662.1\|AF242534_1 Bp26 [Brucella cetaceae], gi\|10312108\|gb\|AAG16661.1\|AF242533_1 ... gi\|163674451, gi... - gi\|163843728\|ref\|YP_001628132.1\| 26 kDa periplasmic immunogenic protein precursor [Brucella suis ATC... gi\|254689664 - gi\|254689664\|ref\|ZP_05152918.1\| hypothetical protein Babob68_05724 [Brucella abortus bv. 6 str. 870] gi\|225852956, gi... - gi\|225852956\|ref\|YP_002733189.1\| hypothetical protein BMEA_A1527 [Brucella melitensis ATCC 23457], g... gi\|254702192 - gi\|254702192\|ref\|ZP_05164020.1\| hypothetical protein Bsuib55_15219 [Brucella suis bv. 5 str. 513] gi\|254697807 - gi\|254697807\|ref\|ZP_05159635.1\| hypothetical protein Babob28_08888 [Brucella abortus bv. 2 str. 86/8... gi\|254708145 - gi\|254708145\|ref\|ZP_05169973.1\| hypothetical protein BpinM_14622 [Brucella pinnipedialis M163/99/10] BP26_BRUME, PP26... - (Q57099) 26 kDa periplasmic immunogenic protein precursor (28 kDa outer membrane protein) (28 kDa cy... gi\|254704728 - gi\|254704728\|ref\|ZP_05166556.1\| hypothetical protein Bsuib36_12577 [Brucella suis bv. 3 str. 686] gi\|254714697 - gi\|254714697\|ref\|ZP_05176508.1\| hypothetical protein BcetM6_15434 [Brucella ceti M644/93/1] gi\|161336233, gi... - gi\|161619422\|ref\|YP_001593309.1\| 26 kDa periplasmic immunogenic protein precursor [Brucella canis AT... gi\|254710514 - gi\|254710514\|ref\|ZP_05172325.1\| hypothetical protein BpinB_09657 [Brucella pinnipedialis B2/94] gi\|254730696 - gi\|254730696\|ref\|ZP_05189274.1\| hypothetical protein Babob42_05744 [Brucella abortus bv. 4 str. 292] gi\|254717758 - gi\|254717758\|ref\|ZP_05179569.1\| hypothetical protein BcetM_15416 [Brucella ceti M13/05/1] gi\|62196498, gi\|... - gi\|62290366\|ref\|YP_222159.1\| Omp28, immunoreactive 28 kDa outer membrane protein [Brucella abortus b... BP26_BRUSU - 26 kDa periplasmic immunogenic protein OS=Brucella suis biovar 1 (strain 1330) GN=bp26 PE=3 SV=1 BP26_BRUME - 26 kDa periplasmic immunogenic protein OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / N... BP26_BRUSU - 26 kDa periplasmic immunogenic protein OS=Brucella suis GN=bp26 PE=3 SV=1 gi\|32699286, gi\|... - gi\|32699292\|gb\|AAO39771.1\| BP26 [Brucella melitensis biovar Abortus], gi\|32699290\|gb\|AAO39770.1\| BP2... gi\|32699300 - gi\|32699300\|gb\|AAO39775.1\| BP26 [Brucella melitensis biovar Ovis]	194.0	[0..3]	[233..13]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFKVIALAA LMGISGMAAQ ANELPDGPHI VTSGTASVDA VPDIATLAIE VNVAAKDAAT  60
   61 AKKQADERVA QYISFLELNQ IAKKDISSAN LRTQPDYDYQ DGKSILKGYR AVRTVEVTLR 120
  121 QLDKLNSLLD GALK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [135-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGLNEIRSVS LGVAQPDAYK DKARKAAIDN AIHQAQELAN GFHRKLGPVY SVRYHVSNYQ  60
   61 PSPMVRMMKA DAAPVSAQET YEQAAIQFDD QVDVVFQLEP VDQQPAKTPA AQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits