YRC Public Data Repository - Protein Structure Prediction

Protein:	YGGC_ECOLI
Organism:	Escherichia coli
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGGC_ECOLI.

Description	E-value	Query Range	Subject Range
COAA_PHOLL - Pantothenate kinase OS=Photorhabdus luminescens subsp. laumondii GN=coaA PE=3 SV=1 COAA_PHOLL - Pantothenate kinase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT...	155.0	[0..1]	[236..31]
gi\|227555821, gi... - gi\|227555821\|ref\|ZP_03985868.1\| pantothenate kinase [Enterococcus faecalis HH22], gi\|227174988\|gb\|EE... COAA_ENTFA - Pantothenate kinase OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=coaA PE=3 SV=1 gi\|238857840, gi... - gi\|238857840\|ref\|ZP_04648069.1\| pantothenate kinase [Enterococcus faecalis TUSoD Ef11], gi\|238829510... COAA_ENTFA - Pantothenate kinase OS=Enterococcus faecalis GN=coaA PE=3 SV=1 gi\|229547001, gi... - gi\|229547001\|ref\|ZP_04435726.1\| pantothenate kinase [Enterococcus faecalis TX1332], gi\|229307929\|gb\|... gi\|229550584, gi... - gi\|229550584\|ref\|ZP_04439309.1\| pantothenate kinase [Enterococcus faecalis ATCC 29200], gi\|229304303...	155.0	[0..1]	[236..26]
COAA_PASMU - Pantothenate kinase OS=Pasteurella multocida (strain Pm70) GN=coaA PE=3 SV=1 COAA_PASMU - Pantothenate kinase OS=Pasteurella multocida GN=coaA PE=3 SV=1	154.0	[0..1]	[236..35]
COAA_ACTSZ - Pantothenate kinase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=coaA PE=3 SV=1	154.0	[0..1]	[236..37]
COAA_MANSM - Pantothenate kinase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=coaA PE=3 SV=1	153.0	[0..1]	[236..35]
gi\|194436694, gi... - gi\|83587672\|ref\|ZP_00926299.1\| COG1072: Panthothenate kinase [Escherichia coli 101-1], gi\|194436694\|...	153.0	[0..1]	[236..1]
COAA_BRUAB - Pantothenate kinase OS=Brucella abortus biovar 1 (strain 9-941) GN=coaA PE=3 SV=1 COAA_BRUA2 - Pantothenate kinase OS=Brucella abortus (strain 2308) GN=coaA PE=3 SV=1 COAA_BRUAB - Pantothenate kinase OS=Brucella abortus GN=coaA PE=3 SV=1 gi\|237788506, gi... - gi\|237816439\|ref\|ZP_04595432.1\| pantothenate kinase [Brucella abortus str. 2308 A], gi\|237788506\|gb\|... COAA_BRUA1 - Pantothenate kinase OS=Brucella abortus (strain S19) GN=coaA PE=3 SV=1 gi\|254690222 - gi\|254690222\|ref\|ZP_05153476.1\| pantothenate kinase [Brucella abortus bv. 6 str. 870] gi\|254731253 - gi\|254731253\|ref\|ZP_05189831.1\| pantothenate kinase [Brucella abortus bv. 4 str. 292] gi\|254694710 - gi\|254694710\|ref\|ZP_05156538.1\| pantothenate kinase [Brucella abortus bv. 3 str. Tulya] gi\|254696337 - gi\|254696337\|ref\|ZP_05158165.1\| pantothenate kinase [Brucella abortus bv. 2 str. 86/8/59]	153.0	[0..1]	[237..35]
gi\|90420981, gi\|... - gi\|90420981\|ref\|ZP_01228885.1\| pantothenate kinase [Aurantimonas sp. SI85-9A1], gi\|90334759\|gb\|EAS48... gi\|90420981, gi\|... - gi\|90420981\|ref\|ZP_01228885.1\| pantothenate kinase [Aurantimonas sp. SI85-9A1], gi\|90334759\|gb\|EAS48...	152.0	[0..1]	[237..32]
gi\|59481132, gi\|... - gi\|59713031\|ref\|YP_205807.1\| pantothenate kinase [Vibrio fischeri ES114], gi\|59481132\|gb\|AAW86919.1\|...	152.0	[0..1]	[237..23]
COAA_HAEDU - Pantothenate kinase OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=coaA PE=3 SV=1 COAA_HAEDU - Pantothenate kinase OS=Haemophilus ducreyi GN=coaA PE=3 SV=1	152.0	[0..1]	[236..31]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIELTVNGL KIQAQYQNEE IENVHKPLLH MLAALQTVNP QRRTVVFLCA PPGTGKSTLT  60
   61 TFWEYLAQQD PELPAIQTLP MDGFHHYNSW LDAHQLRPFK GAPETFDVAK LTENLRQVVE 120
  121 GDCTWPQYDR QKHDPVEDAL HVTAPLVIVE GNWLLLDDEK WLELASFCDF SIFIHAPAQI 180
  181 LRERLISRKI AGGLTRQVAE AFYARTDGPN VERVLMNSRQ ANLIVEMTEE GRYHFTS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1esmA
Description:	Pantothenate kinase PanK
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.470983068319171	bayes_pls_golite062009
hydrolase activity	0.0582794297634999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: