YRC Public Data Repository - Protein Structure Prediction

Protein:	YGCL_ECOLI
Organism:	Escherichia coli
Length:	502 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGCL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|90580716, gi\|... - gi\|90580716\|ref\|ZP_01236520.1\| hypothetical protein VAS14_16302 [Vibrio angustum S14], gi\|90438173\|g...	502.0	[0..1]	[494..1]
gi\|89052193, gi\|... - gi\|89072092\|ref\|ZP_01158688.1\| hypothetical protein SKA34_08658 [Photobacterium sp. SKA34], gi\|89052...	498.0	[0..1]	[494..1]
gi\|37524747, gi\|... - gi\|37524747\|ref\|NP_928091.1\| hypothetical protein plu0746 [Photorhabdus luminescens subsp. laumondii...	495.0	[0..1]	[494..1]
gi\|75235640 - gi\|75235640\|ref\|ZP_00719814.1\| hypothetical protein EcolE1_01002624 [Escherichia coli E110019]	493.0	[0..1]	[486..3]
gi\|39996487, gi\|... - gi\|39996487\|ref\|NP_952438.1\| hypothetical protein GSU1385 [Geobacter sulfurreducens PCA], gi\|3998336...	492.0	[0..1]	[497..1]
gi\|75230029 - gi\|75230029\|ref\|ZP_00716539.1\| hypothetical protein EcolB7_01001717 [Escherichia coli B7A]	487.0	[0..1]	[486..3]
gi\|75187488 - gi\|75187488\|ref\|ZP_00700755.1\| hypothetical protein EcolE_01000719 [Escherichia coli E24377A]	486.0	[0..1]	[486..3]
gi\|208726806, gi... - gi\|208807005\|ref\|ZP_03249342.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str... gi\|208814153, gi... - gi\|208814153\|ref\|ZP_03255482.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str... gi\|208738547, gi... - gi\|208818424\|ref\|ZP_03258744.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str... gi\|209157099, gi... - gi\|209395699\|ref\|YP_002272224.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 st... gi\|168778745, gi... - gi\|189003534\|gb\|EDU72520.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|189372126, gi... - gi\|189372126\|gb\|EDU90542.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|189377504, gi... - gi\|189377504\|gb\|EDU95920.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|195939473 - gi\|195939473\|ref\|ZP_03084855.1\| hypothetical protein EscherichcoliO157_24183 [Escherichia coli O157:... gi\|168755507, gi... - gi\|189357248\|gb\|EDU75667.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|168762838, gi... - gi\|189366897\|gb\|EDU85313.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|168768854, gi... - gi\|189362094\|gb\|EDU80513.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|187769577, gi... - gi\|187769577\|gb\|EDU33421.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|188015793, gi... - gi\|188015793\|gb\|EDU53915.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|13363085, gi\|... - gi\|15832868\|ref\|NP_311641.1\| hypothetical protein ECs3614 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|25391294, gi\|... - pir\|\|G85925 hypothetical protein Z4069 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15803277, gi\|... - gi\|15803277\|ref\|NP_289309.1\| hypothetical protein Z4069 [Escherichia coli O157:H7 EDL933], gi\|125172... gi\|13363085, gi\|... - gi\|15832868\|ref\|NP_311641.1\| hypothetical protein ECs3614 [Escherichia coli O157:H7], gi\|13363085\|db... gi\|254794700, gi... - gi\|254794700\|ref\|YP_003079537.1\| hypothetical protein ECSP_3708 [Escherichia coli O157:H7 str. TW143...	484.0	[0..1]	[486..1]
gi\|88774758, gi\|... - gi\|88793932\|ref\|ZP_01109644.1\| hypothetical protein MADE_03886 [Alteromonas macleodii 'Deep ecotype'...	482.0	[0..1]	[490..1]
gi\|77544648, gi\|... - gi\|77918565\|ref\|YP_356380.1\| hypothetical protein Pcar_0957 [Pelobacter carbinolicus DSM 2380], gi\|7...	478.0	[0..1]	[495..1]

Back

Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLLIDNWIP VRPRNGGKVQ IINLQSLYCS RDQWRLSLPR DDMELAALAL LVCIGQIIAP  60
   61 A

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [62-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDDVEFRHRI MNPLTEDEFQ QLIAPWIDMF YLNHAEHPFM QTKGVKANDV TPMEKLLAGV  60
   61 SGATNCAFVN QPGQGEALCG GCTAIALFNQ ANQAPGFGGG FKSGLRGGTP VTTFVRGIDL 120
  121 RSTVLLNVLT LPRLQKQFPN ESHTENQPTW IKPIKSNESI PASSIGFVRG LFWQPAHIEL 180
  181 CDPIGIGKCS CCGQESNLRY TGFLKEKFTF TVNG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [276-358]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LWPHPHSPCL VTVKKGEVEE KFLAFTTSAP SWTQISRVVV DKIIQNENGN RVAAVVNQFR  60
   61 NIAPQSPLEL IMGGYRNNQA SIL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [359-502]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERRHDVLMFN QGWQQYGNVI NEIVTVGLGY KTALRKALYT FAEGFKNKDF KGAGVSVHET  60
   61 AERHFYRQSE LLIPDVLANV NFSQADEVIA DLRDKLHQLC EMLFNQSVAP YAHHPKLIST 120
  121 LALARATLYK HLRELKPQGG PSNG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.979	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.941	N/A	N/A	a.7.8	GAT domain
View	Download	0.933	N/A	N/A	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View	Download	0.892	N/A	N/A	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View	Download	0.890	N/A	N/A	a.112.1	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits