YRC Public Data Repository - Protein Structure Prediction

Protein:	YGCK_ECOLI
Organism:	Escherichia coli
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGCK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|39996488, gi\|... - gi\|39996488\|ref\|NP_952439.1\| hypothetical protein GSU1386 [Geobacter sulfurreducens PCA], gi\|3998336...	168.0	[0..1]	[158..1]
gi\|222831902, gi... - gi\|224172292\|ref\|XP_002339633.1\| predicted protein [Populus trichocarpa], gi\|222831902\|gb\|EEE70379.1... gi\|67981952, gi\|... - gi\|95930839\|ref\|ZP_01313570.1\| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684], ...	162.0	[0..1]	[159..1]
gi\|88602660, gi\|... - gi\|88602660\|ref\|YP_502838.1\| hypothetical protein Mhun_1379 [Methanospirillum hungatei JF-1], gi\|881...	151.0	[0..13]	[155..20]
gi\|68184598, gi\|... - gi\|91772624\|ref\|YP_565316.1\| hypothetical protein Mbur_0595 [Methanococcoides burtonii DSM 6242], gi...	148.0	[0..18]	[159..4]
gi\|882652\|gb\|AAA... - ORF_f131 gi\|882652 - gi\|882652\|gb\|AAA69269.1\| ORF_f131	141.0	[0..1]	[129..1]
gi\|71741624, gi\|... - gi\|71838078\|ref\|ZP_00677840.1\| hypothetical protein PproDRAFT_1803 [Pelobacter propionicus DSM 2379]...	125.0	[0..12]	[160..6]
gi\|116331941, gi... - gi\|116331941\|ref\|YP_801659.1\| hypothetical protein LBJ_2450 [Leptospira borgpetersenii serovar Hardj... gi\|116327446, gi... - gi\|116327446\|ref\|YP_797166.1\| hypothetical protein LBL_0662 [Leptospira borgpetersenii serovar Hardj...	124.0	[0..19]	[153..25]
gi\|23474685, gi\|... - gi\|78355910\|ref\|YP_387359.1\| hypothetical protein Dde_0863 [Desulfovibrio desulfuricans subsp. desul...	121.0	[0..10]	[155..17]
gi\|37524748, gi\|... - gi\|37524748\|ref\|NP_928092.1\| hypothetical protein plu0747 [Photorhabdus luminescens subsp. laumondii...	120.0	[0..17]	[160..31]
gi\|62129077, gi\|... - gi\|62181444\|ref\|YP_217861.1\| putative transposase [Salmonella enterica subsp. enterica serovar Chole...	119.0	[0..19]	[159..23]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEIDAMAL YRAWQQLDNG SCAQIRRVSE PDELRDIPAF YRLVQPFGWE NPRHQQALLR  60
   61 MVFCLSAGKN VIRHQDKKSE QTTGISLGRA LANSGRINER RIFQLIRADR TADMVQLRRL 120
  121 LTHAEPVLDW PLMARMLTWW GKRERQQLLE DFVLTTNKNA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.60206
Match:	PF09485.1
Description:	No description for PF09485.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits