YRC Public Data Repository - Protein Structure Prediction

Protein:	YGCJ_ECOLI
Organism:	Escherichia coli
Length:	363 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGCJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67981951, gi\|... - gi\|95930838\|ref\|ZP_01313569.1\| CRISPR-associated protein, CT1975 [Desulfuromonas acetoxidans DSM 684...	464.0	[0..1]	[363..1]
gi\|39983370, gi\|... - gi\|39996489\|ref\|NP_952440.1\| CRISPR-associated Cse4 family protein [Geobacter sulfurreducens PCA], g...	464.0	[0..1]	[363..1]
gi\|116327445, gi... - gi\|116327445\|ref\|YP_797165.1\| hypothetical protein LBL_0661 [Leptospira borgpetersenii serovar Hardj... gi\|116331942, gi... - gi\|116331942\|ref\|YP_801660.1\| hypothetical protein LBJ_2451 [Leptospira borgpetersenii serovar Hardj...	424.0	[0..1]	[352..1]
gi\|190903154, gi... - gi\|75230031\|ref\|ZP_00716541.1\| hypothetical protein EcolB7_01001719 [Escherichia coli B7A], gi\|19116...	423.0	[0..1]	[339..1]
gi\|192957063, gi... - gi\|75235642\|ref\|ZP_00719816.1\| hypothetical protein EcolE1_01002626 [Escherichia coli E110019], gi\|1...	423.0	[0..1]	[339..1]
gi\|75187486, gi\|... - gi\|75187486\|ref\|ZP_00700753.1\| hypothetical protein EcolE_01000717 [Escherichia coli E24377A], gi\|15...	423.0	[0..1]	[339..1]
gi\|12517215, gi\|... - gi\|15803275\|ref\|NP_289307.1\| hypothetical protein Z4067 [Escherichia coli O157:H7 EDL933], gi\|125172... gi\|15832866, gi\|... - gi\|15832866\|ref\|NP_311639.1\| hypothetical protein ECs3612 [Escherichia coli O157:H7], gi\|13363083\|db... gi\|189357362, gi... - gi\|189357362\|gb\|EDU75781.1\| CRISPR-associated protein, Cse4 family [Escherichia coli O157:H7 str. EC... gi\|188015779, gi... - gi\|188015779\|gb\|EDU53901.1\| CRISPR-associated protein, Cse4 family [Escherichia coli O157:H7 str. EC... gi\|218706253, gi... - gi\|218706253\|ref\|YP_002413772.1\| hypothetical protein ECUMN_3085 [Escherichia coli UMN026], gi\|21843... gi\|208741864, gi... - gi\|208821741\|ref\|ZP_03262061.1\| CRISPR-associated protein, Cse4 family [Escherichia coli O157:H7 str... gi\|208734950, gi... - gi\|208813673\|ref\|ZP_03255002.1\| CRISPR-associated protein, Cse4 family [Escherichia coli O157:H7 str... gi\|217319967, gi... - gi\|217327600\|ref\|ZP_03443683.1\| CRISPR-associated protein, Cse4 family [Escherichia coli O157:H7 str... gi\|254594098, gi... - gi\|254794698\|ref\|YP_003079535.1\| hypothetical protein ECSP_3706 [Escherichia coli O157:H7 str. TW143... gi\|209399904, gi... - gi\|209399904\|ref\|YP_002272222.1\| CRISPR-associated protein, Cse4 family [Escherichia coli O157:H7 st... gi\|168800161, gi... - gi\|189377461\|gb\|EDU95877.1\| CRISPR-associated protein, Cse4 family [Escherichia coli O157:H7 str. EC... gi\|189372221, gi... - gi\|189372221\|gb\|EDU90637.1\| CRISPR-associated protein, Cse4 family [Escherichia coli O157:H7 str. EC... gi\|208806127, gi... - gi\|208806127\|ref\|ZP_03248464.1\| CRISPR-associated protein, Cse4 family [Escherichia coli O157:H7 str... gi\|195939471 - gi\|195939471\|ref\|ZP_03084853.1\| hypothetical protein EscherichcoliO157_24173 [Escherichia coli O157:... gi\|168768852, gi... - gi\|189362090\|gb\|EDU80509.1\| CRISPR-associated protein, Cse4 family [Escherichia coli O157:H7 str. EC... gi\|15832866, gi\|... - gi\|15832866\|ref\|NP_311639.1\| hypothetical protein ECs3612 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168762840, gi... - gi\|189366911\|gb\|EDU85327.1\| CRISPR-associated protein, Cse4 family [Escherichia coli O157:H7 str. EC... gi\|25371911, gi\|... - pir\|\|D91080 hypothetical protein ECs3612 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|189003158, gi... - gi\|189003158\|gb\|EDU72144.1\| CRISPR-associated protein, Cse4 family [Escherichia coli O157:H7 str. EC... gi\|187769583, gi... - gi\|187769583\|gb\|EDU33427.1\| CRISPR-associated protein, Cse4 family [Escherichia coli O157:H7 str. EC...	422.0	[0..1]	[339..1]
gi\|77544650, gi\|... - gi\|77918567\|ref\|YP_356382.1\| CRISPR-associated Cse4 family protein [Pelobacter carbinolicus DSM 2380...	421.0	[0..1]	[358..1]
gi\|88774760, gi\|... - gi\|88793934\|ref\|ZP_01109646.1\| hypothetical protein MADE_03896 [Alteromonas macleodii 'Deep ecotype'...	421.0	[0..1]	[359..1]
gi\|74313324, gi\|... - gi\|74313324\|ref\|YP_311743.1\| putative cytoplasmic protein [Shigella sonnei Ss046], gi\|73856801\|gb\|AA...	417.0	[0..1]	[339..1]

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Predicted Domain #1

Region A:
Residues: [1-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNFINIHVL ISHSPSCLNR DDMNMQKDAI FGGKRRVRIS SQSLKRAMRK SGYYAQNIGE  60
   61 SSLRTIHLAQ LRDVLRQKLG ERFDQKIIDK TLALLSGKSV DEAEKISADA VTPWVVGEIA 120
  121 WFCEQVAKAE ADNLDDKKLL KVLKEDIAAI RVNLQQGVDI ALSGRMATSG MMTELGKVDG 180
  181 AMSIAHAITT HQVDSDIDWF TAVDDLQEQG SAHLGTQEFS SGVFYRYANI NLAQLQENLG 240
  241 GASREQALEI ATHVVHMLAT EVP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [264-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAKQRTYAAF NPADMVMVNF SDMPLSMANA FEKAVKAKDG FLQPSIQAFN QYWDRVANGY  60
   61 GLNGAAAQFS LSDVDPITAQ VKQMPTLEQL KSWVRNNGEA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits