YRC Public Data Repository - Protein Structure Prediction

Protein:	YGAW_ECOLI
Organism:	Escherichia coli
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGAW_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|73856719, gi\|... - gi\|74313242\|ref\|YP_311661.1\| hypothetical protein SSON_2815 [Shigella sonnei Ss046], gi\|73856719\|gb\|... gi\|81242187, gi\|... - gi\|82778039\|ref\|YP_404388.1\| hypothetical protein SDY_2860 [Shigella dysenteriae Sd197], gi\|81242187...	242.0	[0..1]	[149..1]
gi\|28806057, gi\|... - gi\|28897844\|ref\|NP_797449.1\| hypothetical protein VP1070 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28806057 - gi\|28806057\|dbj\|BAC59333.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|149748564, gi... - gi\|153838030\|ref\|ZP_01990697.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|...	241.0	[0..8]	[146..9]
gi\|218366429, gi... - gi\|218559660\|ref\|YP_002392573.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218706168, gi... - gi\|218706168\|ref\|YP_002413687.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|237706710, gi... - gi\|237706710\|ref\|ZP_04537191.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|91073602, gi\|... - gi\|91212028\|ref\|YP_542014.1\| hypothetical protein UTI89_C3027 [Escherichia coli UTI89], gi\|91073602\|... gi\|117624905, gi... - gi\|117624905\|ref\|YP_853821.1\| hypothetical protein APECO1_3852 [Escherichia coli APEC O1], gi\|115514...	239.0	[0..1]	[149..1]
gi\|75854152, gi\|... - gi\|75854152\|ref\|ZP_00761864.1\| COG0477: Permeases of the major facilitator superfamily [Vibrio sp. E...	238.0	[0..8]	[146..9]
gi\|199603807, gi... - gi\|200386709\|ref\|ZP_03213321.1\| membrane protein [Salmonella enterica subsp. enterica serovar Vircho... gi\|204929648, gi... - gi\|204929648\|ref\|ZP_03220722.1\| membrane protein [Salmonella enterica subsp. enterica serovar Javian... gi\|197265692, gi... - gi\|197265692\|ref\|ZP_03165766.1\| membrane protein [Salmonella enterica subsp. enterica serovar Saintp... gi\|198244131, gi... - gi\|198244131\|ref\|YP_002216774.1\| membrane protein [Salmonella enterica subsp. enterica serovar Dubli... gi\|194709484, gi... - gi\|194733982\|ref\|YP_002115755.1\| membrane protein [Salmonella enterica subsp. enterica serovar Schwa... ALAE_SALTY - L-alanine exporter AlaE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=alaE PE=3... gi\|197213862, gi... - gi\|197250159\|ref\|YP_002147698.1\| membrane protein [Salmonella enterica subsp. enterica serovar Agona... gi\|194442627, gi... - gi\|194442627\|ref\|YP_002042044.1\| membrane protein [Salmonella enterica subsp. enterica serovar Newpo... gi\|194407669, gi... - gi\|194449365\|ref\|YP_002046762.1\| membrane protein [Salmonella enterica subsp. enterica serovar Heide... gi\|195633238, gi... - gi\|195633238\|gb\|EDX51652.1\| membrane protein [Salmonella enterica subsp. enterica serovar Newport st... gi\|168822886, gi... - gi\|205340783\|gb\|EDZ27547.1\| membrane protein [Salmonella enterica subsp. enterica serovar Weltevrede... gi\|205336584, gi... - gi\|205336584\|gb\|EDZ23348.1\| membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg... gi\|168262093, gi... - gi\|205349030\|gb\|EDZ35661.1\| membrane protein [Salmonella enterica subsp. enterica serovar Hadar str.... gi\|167992520, gi... - gi\|205329295\|gb\|EDZ16059.1\| membrane protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i... lcl\|NC_016856.1_... - [gene=STM14_3380] [protein=putative inner membrane protein] [protein_id=YP_005238895.1] [location=29... gi\|168238714, gi... - gi\|197288494\|gb\|EDY27871.1\| membrane protein [Salmonella enterica subsp. enterica serovar Schwarzeng... gi\|161615694, gi... - gi\|161615694\|ref\|YP_001589659.1\| hypothetical protein SPAB_03479 [Salmonella enterica subsp. enteric... gi\|167552702, gi... - gi\|205322685\|gb\|EDZ10524.1\| membrane protein [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|238909571 - gi\|238909571\|ref\|ZP_04653408.1\| hypothetical protein SentesTe_00350 [Salmonella enterica subsp. ente... gi\|205273531, gi... - gi\|205353750\|ref\|YP_002227551.1\| hypothetical protein SG2706 [Salmonella enterica subsp. enterica se... gi\|206709871, gi... - gi\|207858068\|ref\|YP_002244719.1\| hypothetical protein SEN2644 [Salmonella enterica subsp. enterica s...	237.0	[0..1]	[149..1]
gi\|224469111, gi... - gi\|224584584\|ref\|YP_002638382.1\| hypothetical protein SPC_2845 [Salmonella enterica subsp. enterica ... gi\|62128936, gi\|... - gi\|62181303\|ref\|YP_217720.1\| hypothetical protein SC2733 [Salmonella enterica subsp. enterica serova...	236.0	[0..1]	[149..1]
gi\|124124043, gi... - gi\|153800417\|ref\|ZP_01955003.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124124043... gi\|153819805, gi... - gi\|153819805\|ref\|ZP_01972472.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650... gi\|75830172, gi\|... - gi\|75830172\|ref\|ZP_00759455.1\| hypothetical protein VchoM_01001827 [Vibrio cholerae MO10], gi\|254848... gi\|153821158, gi... - gi\|229511688\|ref\|ZP_04401167.1\| hypothetical protein VCE_003097 [Vibrio cholerae B33], gi\|229351653\|... gi\|75827156, gi\|... - gi\|75827156\|ref\|ZP_00756591.1\| hypothetical protein VchoO_01001316 [Vibrio cholerae O395], gi\|227118... gi\|75820853, gi\|... - gi\|75820853\|ref\|ZP_00750892.1\| hypothetical protein VchoV5_01000300 [Vibrio cholerae V51], gi\|116221... gi\|227081957, gi... - gi\|227081957\|ref\|YP_002810508.1\| hypothetical protein VCM66_1751 [Vibrio cholerae M66-2], gi\|2270098... gi\|229355578, gi... - gi\|229508073\|ref\|ZP_04397578.1\| hypothetical protein VCF_003307 [Vibrio cholerae BX 330286], gi\|2293... gi\|229518827, gi... - gi\|229518827\|ref\|ZP_04408270.1\| hypothetical protein VCC_002852 [Vibrio cholerae RC9], gi\|229343516\|... gi\|229607634, gi... - gi\|229607634\|ref\|YP_002878282.1\| hypothetical protein VCD_002546 [Vibrio cholerae MJ-1236], gi\|22937... ALAE_VIBCH - L-alanine exporter AlaE OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=... gi\|121585799, gi... - gi\|121585799\|ref\|ZP_01675593.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215499... gi\|11292718 - pir\|\|H82150 conserved hypothetical protein VC1828 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|153214292, gi... - gi\|153214292\|ref\|ZP_01949309.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124115440\|... gi\|153221549, gi... - gi\|153221549\|ref\|ZP_01952488.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241195... gi\|149740026, gi... - gi\|153826261\|ref\|ZP_01978928.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149740026...	236.0	[0..8]	[144..9]
gi\|229342657, gi... - gi\|229520291\|ref\|ZP_04409717.1\| hypothetical protein VIF_000811 [Vibrio cholerae TM 11079-80], gi\|22... gi\|229347915, gi... - gi\|229515210\|ref\|ZP_04404670.1\| hypothetical protein VCB_002867 [Vibrio cholerae TMA 21], gi\|2293479... gi\|150424502, gi... - gi\|254285230\|ref\|ZP_04960195.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197753... gi\|121727627, gi... - gi\|75814713\|ref\|ZP_00745269.1\| hypothetical protein VchoV_01002580 [Vibrio cholerae V52], gi\|1217276...	236.0	[0..8]	[144..9]
gi\|213424569 - gi\|213424569\|ref\|ZP_03357358.1\| hypothetical protein SentesTyphi_02126 [Salmonella enterica subsp. e... gi\|213053449 - gi\|213053449\|ref\|ZP_03346327.1\| hypothetical protein Salmoneentericaenterica_11296 [Salmonella enter... gi\|213027417 - gi\|213027417\|ref\|ZP_03341864.1\| hypothetical protein Salmonelentericaenterica_35544 [Salmonella ente... gi\|213999983 - gi\|213999983\|ref\|ZP_03410718.1\| hypothetical protein Salmonellentericaenterica_04606 [Salmonella ent... gi\|213864808 - gi\|213864808\|ref\|ZP_03386927.1\| hypothetical protein SentesT_33500 [Salmonella enterica subsp. enter... gi\|213650070 - gi\|213650070\|ref\|ZP_03380123.1\| hypothetical protein SentesTy_24128 [Salmonella enterica subsp. ente... gi\|213611259 - gi\|213611259\|ref\|ZP_03370085.1\| hypothetical protein SentesTyp_07009 [Salmonella enterica subsp. ent... gi\|25367697, gi\|... - gi\|25367697\|pir\|\|AG0840 probable membrane protein STY2923 [imported] - Salmonella enterica subsp. en... gi\|29138695, gi\|... - gi\|29143062\|ref\|NP_806404.1\| hypothetical protein t2696 [Salmonella enterica subsp. enterica serovar... gi\|16761582 - gi\|16761582\|ref\|NP_457199.1\| hypothetical protein STY2923 [Salmonella enterica subsp. enterica serov...	235.0	[0..1]	[149..1]
gi\|37680447, gi\|... - gi\|37680447\|ref\|NP_935056.1\| hypothetical protein VV2263 [Vibrio vulnificus YJ016], gi\|37199195\|dbj\|... gi\|27365510, gi\|... - gi\|27365510\|ref\|NP_761038.1\| hypothetical protein VV1_2181 [Vibrio vulnificus CMCP6], gi\|27361658\|gb...	235.0	[0..8]	[146..9]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSPQSRLRH AVADTFAMVV YCSVVNMCIE VFLSGMSFEQ SFYSRLVAIP VNILIAWPYG  60
   61 MYRDLFMRAA RKVSPSGWIK NLADILAYVT FQSPVYVAIL LVVGADWHQI MAAVSSNIVV 120
  121 SMLMGAVYGY FLDYCRRLFK VSRYQQVKA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	130.29243
Match:	PF06610.4
Description:	No description for PF06610.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits