YRC Public Data Repository - Protein Structure Prediction

Protein:	YFRC_PROVU
Organism:	Proteus vulgaris
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFRC_PROVU.

Description	E-value	Query Range	Subject Range
gi\|186680890, gi... - gi\|53688951\|ref\|ZP_00112364.2\| COG0298: Hydrogenase maturation factor [Nostoc punctiforme PCC 73102]...	115.0	[0..1]	[82..1]
gi\|98152891, gi\|... - gi\|98152891\|ref\|YP_611140.1\| hydrogenase assembly chaperone hypC/hupF [Sphingopyxis alaskensis RB225...	115.0	[0..1]	[95..1]
gi\|75910799, gi\|... - gi\|75910799\|ref\|YP_325095.1\| hydrogenase expression/formation protein (HUPF/HYPC) [Anabaena variabil...	114.0	[0..1]	[83..1]
gi\|46055, gi\|2126466 - gi\|46055\|emb\|CAA43328.1\| HypD [Rhodobacter capsulatus], pir\|\|S59984 hypD protein - Rhodobacter capsu...	114.0	[0..1]	[85..1]
gi\|150840672, gi... - gi\|75428698\|ref\|ZP_00731827.1\| hydrogenase maturation factor [Actinobacillus succinogenes 130Z], gi\|...	113.0	[0..1]	[86..1]
gi\|17130040, gi\|... - gi\|17228190\|ref\|NP_484738.1\| hydrogenase expression/formation protein [Nostoc sp. PCC 7120], gi\|1713... gi\|25313751 - pir\|\|AE1893 hydrogenase expression/formation protein [imported] - Nostoc sp. (strain PCC 7120)	112.0	[0..1]	[80..1]
gi\|52426413, gi\|... - gi\|52426413\|ref\|YP_089550.1\| hydrogenase 2 accessory protein HypG [Mannheimia succiniciproducens MBE...	110.0	[0..1]	[86..1]
gi\|78518017, gi\|... - gi\|78694901\|ref\|ZP_00859414.1\| Hydrogenase expression/formation protein (HUPF/HYPC) [Bradyrhizobium ...	109.0	[0..1]	[87..1]
gi\|238727226, gi... - gi\|77978841\|ref\|ZP_00834265.1\| COG0298: Hydrogenase maturation factor [Yersinia intermedia ATCC 2990...	109.0	[0..1]	[86..1]
gi\|77958079 - gi\|77958079\|ref\|ZP_00822119.1\| COG0298: Hydrogenase maturation factor [Yersinia bercovieri ATCC 4397...	108.0	[0..1]	[94..1]

Back

Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLGIPGQVV EVGKTITENA LVDVCGVKRE VNIALVCEGE PDTMIGKWVL VHVGFAMSIV  60
   61 NEQEAQETLN ALMAMGEVED DVSAFLYGEE STAKRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2ot2A
Description:	No description for 2ot2A was found.

Predicted functions:

Term	Confidence	Notes
binding	0.339357445627225	bayes_pls_golite062009
protein binding	0.0136825473848199	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: