YRC Public Data Repository - Protein Structure Prediction

Protein:	YFJZ_ECOLI
Organism:	Escherichia coli
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFJZ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75187726, gi\|... - gi\|75187726\|ref\|ZP_00700993.1\| hypothetical protein EcolE_01000963 [Escherichia coli E24377A], gi\|15...	209.0	[0..4]	[103..18]
gi\|70608388 - gi\|70608388\|gb\|AAZ04460.1\| conserved hypothetical protein [Escherichia coli] gi\|237706322, gi... - gi\|237706322\|ref\|ZP_04536803.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|117625241, gi... - gi\|117625241\|ref\|YP_854324.1\| hypothetical protein APECO1_3487 [Escherichia coli APEC O1], gi\|115514...	208.0	[0..4]	[103..38]
gi\|47600624 - gi\|47600624\|emb\|CAE55745.1\| hypothetical protein [Escherichia coli Nissle 1917] gi\|47600624 - gi\|47600624\|emb\|CAE55745.1\| hypothetical protein [Escherichia coli Nissle 1917]	208.0	[0..4]	[103..54]
gi\|75211006 - gi\|75211006\|ref\|ZP_00711119.1\| hypothetical protein EcolB_01001803 [Escherichia coli B171] gi\|195183235 - gi\|195183235\|dbj\|BAG66778.1\| predicted protein [Escherichia coli O111:H-]	206.0	[0..4]	[103..18]
gi\|91075518, gi\|... - gi\|91213944\|ref\|YP_543930.1\| hypothetical protein UTI89_C4996 [Escherichia coli UTI89], gi\|91075518\|... gi\|110644740, gi... - gi\|110644740\|ref\|YP_672470.1\| hypothetical protein ECP_4633 [Escherichia coli 536], gi\|110346332\|gb\|... gi\|75242261 - gi\|75242261\|ref\|ZP_00726023.1\| hypothetical protein EcolF_01000716 [Escherichia coli F11] gi\|23954301 - gi\|23954301\|emb\|CAD42100.1\| hypothetical protein [Escherichia coli]	205.0	[0..4]	[103..18]
gi\|91210176, gi\|... - gi\|91210176\|ref\|YP_540162.1\| intergenic-region protein [Escherichia coli UTI89], gi\|91071750\|gb\|ABE0...	205.0	[0..4]	[103..48]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTTWGLQR DITPRLGARL VQEGNQLHYL ADRASITGKF SDAECPKLDV VFPHFISQIE  60
   61 SMLTTGELNP RHAQCVTLYH NGFTCEADTL GSCGYVYIAV YPTQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	2jn7A
Description:	No description for 2jn7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits