YRC Public Data Repository - Protein Structure Prediction

Protein:	YFJY_ECOLI
Organism:	Escherichia coli
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFJY_ECOLI.

Description	E-value	Query Range	Subject Range
Y1020_HAHCH - UPF0758 protein HCH_01020 OS=Hahella chejuensis (strain KCTC 2396) GN=HCH_01020 PE=3 SV=1	204.0	[0..3]	[160..64]
Y217_VIBCH - UPF0758 protein VC_0217 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=... RADC_VIBCH, Y217... - UPF0758 protein VC_0217 OS=Vibrio cholerae GN=VC_0217 PE=3 SV=1, DNA repair protein radC homolog OS=... Y205_VIBCM - UPF0758 protein VCM66_0205 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=VCM66_0205 PE=3 SV=1 gi\|229506982, gi... - gi\|229506982\|ref\|ZP_04396490.1\| DNA repair protein RadC [Vibrio cholerae BX 330286], gi\|229356087\|gb... gi\|229509352, gi... - gi\|229509352\|ref\|ZP_04398835.1\| DNA repair protein RadC [Vibrio cholerae B33], gi\|229353667\|gb\|EEO18... gi\|229516299, gi... - gi\|229516299\|ref\|ZP_04405747.1\| DNA repair protein RadC [Vibrio cholerae RC9], gi\|229346725\|gb\|EEO11... gi\|229606490, gi... - gi\|229606490\|ref\|YP_002877138.1\| DNA repair protein RadC [Vibrio cholerae MJ-1236], gi\|229369145\|gb\|... Y3797_VIBC3 - UPF0758 protein VC0395_A2597/VC395_0249 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classica... gi\|75828587, gi\|... - gi\|75828587\|ref\|ZP_00757963.1\| COG2003: DNA repair proteins [Vibrio cholerae MO10], gi\|254851346\|ref... gi\|126509430, gi... - gi\|153820026\|ref\|ZP_01972693.1\| DNA repair protein RadC [Vibrio cholerae NCTC 8457], gi\|126509430\|gb...	203.0	[0..3]	[160..64]
gi\|94427962, gi\|... - gi\|94499761\|ref\|ZP_01306297.1\| DNA repair protein RadC [Oceanobacter sp. RED65], gi\|94427962\|gb\|EAT1...	203.0	[0..4]	[160..65]
Y825_VIBVU - UPF0758 protein VV1_0825 OS=Vibrio vulnificus (strain CMCP6) GN=VV1_0825 PE=3 SV=2 Y825_VIBVU, RADC... - UPF0758 protein VV1_0825 OS=Vibrio vulnificus GN=VV1_0825 PE=3 SV=2, DNA repair protein radC homolog... Y285_VIBVY - UPF0758 protein VV0285 OS=Vibrio vulnificus (strain YJ016) GN=VV0285 PE=3 SV=1	201.0	[0..4]	[160..65]
Y184_VIBPA, RADC... - UPF0758 protein VP0184 OS=Vibrio parahaemolyticus GN=VP0184 PE=3 SV=1, DNA repair protein radC homol... Y184_VIBPA - UPF0758 protein VP0184 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP0184 PE=...	201.0	[0..3]	[160..64]
gi\|85710819, gi\|... - gi\|85710819\|ref\|ZP_01041880.1\| RadC [Idiomarina baltica OS145], gi\|85695223\|gb\|EAQ33160.1\| RadC [Idi...	200.0	[0..2]	[160..99]
gi\|27364274, gi\|... - gi\|27364274\|ref\|NP_759802.1\| DNA repair protein RadC [Vibrio vulnificus CMCP6], gi\|27360392\|gb\|AAO09...	200.0	[0..4]	[160..55]
gi\|67154910 - gi\|67154910\|ref\|ZP_00416655.1\| DNA repair protein RadC [Azotobacter vinelandii AvOP] gi\|67154910, gi\|... - gi\|67154910\|ref\|ZP_00416655.1\| DNA repair protein RadC [Azotobacter vinelandii AvOP], gi\|67089043\|gb...	199.0	[0..5]	[160..177]
Y236_NITOC - UPF0758 protein Noc_0236 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=Noc_0236 PE=3 ...	198.0	[0..4]	[160..65]
Y782_NITEC - UPF0758 protein Neut_0782 OS=Nitrosomonas eutropha (strain C91) GN=Neut_0782 PE=3 SV=1	197.0	[0..3]	[160..64]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEQSLIPQT PVLPLTAQRT VKRALTLLDR HLRETGVAFT STQAARDWLK LKMAGLEREE  60
   61 FMMLYLNQQN QLIAHETLFA GSISSTEVHP REVVKRALYF NAAAVILAHN HPSGDTTPSQ 120
  121 ADKTITQRLV QALQLVDIRV PDHLIVGGRQ IYSFAEHGLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.154902
Match:	2qlcA
Description:	No description for 2qlcA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits