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View Structure Prediction Details

Protein: YFJW_ECOLI
Organism: Escherichia coli
Length: 567 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFJW_ECOLI.

Description E-value Query
Range
Subject
Range
gi|1033136, gi|7... - pir||T08653 hypothetical protein o567 - Escherichia coli, gi|1033136|gb|AAA79810.1| ORF_o567
gi|1033136|gb|AA... - ORF_o567
974.0 [0..1] [567..1]

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Predicted Domain #1
Region A:
Residues: [1-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFVSEREIV RKIFSKKIDF TILAFFYISS IFFLLCSGVL FQYFTAAFTK GNCYECSMKL  60
   61 DYIKQFYFSL ETAWYLISAV AVFIASVFIQ HRIKAYLTLL AITWIVLTIT DVALIHALDN 120
  121 IAMNNILLNI LYNLFGAILL SLFMCLSNSL LFHLNKIKHI PMILSAMIPL VSAIIIAILI 180
  181 TAVIYLLFAR QAVEIEMDIS EGSDIAYVGV KDNEESFGFL NDKKTD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [227-423]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPTYLDVIKN GSLIYNDTQG LSGADIYIVS GCYALPDLLR NVPLDAKKSF LNVKKLEITQ  60
   61 KLPMMGFIQG ESADVMPKAA SRLSLSKQDD KFMLASSVTD SQIKFKSNNA QLMVAFAFMP 120
  121 ITTNGILHDY TYDIIINDKK YKIENHVAPL SRLDKNKKMK CEYQQISDLT NTYNINANYL 180
  181 TGFLLVLKPD DIINYNN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [424-567]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSVLLKTDF AFYKKTYQKL DKIYDDISNG KLSSLRATGI SQFSINGKHL SLRPESEIII  60
   61 SEGSLYGLVN KSKKIKIYGT ADLVFVDNKI MNLRKITYLQ SKLEIFGSSI MDILKYIFGL 120
  121 GLLAISIKFI HSYFKNDVNE NLFL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle