YRC Public Data Repository - Protein Structure Prediction

Protein:	YFJL_ECOLI
Organism:	Escherichia coli
Length:	538 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFJL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|113971657, gi... - gi\|82494987\|ref\|ZP_00880566.1\| conserved Hypothetical protein (f358) [Shewanella sp. MR-4], gi\|82407...	705.0	[0..1]	[533..7]
gi\|110596910, gi... - gi\|110596910\|ref\|ZP_01385200.1\| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031], ...	285.0	[0..259]	[534..24]
gi\|42735848, gi\|... - gi\|42779930\|ref\|NP_977177.1\| hypothetical protein BCE_0854 [Bacillus cereus ATCC 10987], gi\|42735848... gi\|218901976, gi... - gi\|218901976\|ref\|YP_002449810.1\| hypothetical protein BCAH820_0858 [Bacillus cereus AH820], gi\|21853...	275.0	[0..264]	[537..27]
gi\|78355827, gi\|... - gi\|78355827\|ref\|YP_387276.1\| hypothetical protein Dde_0780 [Desulfovibrio desulfuricans subsp. desul...	272.0	[0..270]	[535..14]
gi\|115379220, gi... - gi\|115379220\|ref\|ZP_01466337.1\| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1], gi\|...	260.0	[0..273]	[534..62]
gi\|126104453, gi... - gi\|83373432\|ref\|ZP_00918211.1\| hypothetical protein Rsph17029DRAFT_2706 [Rhodobacter sphaeroides ATC...	255.0	[0..256]	[535..13]
gi\|27350441, gi\|... - gi\|27377298\|ref\|NP_768827.1\| hypothetical protein bll2187 [Bradyrhizobium japonicum USDA 110], gi\|27...	255.0	[0..258]	[532..49]
gi\|83574765, gi\|... - gi\|83591851\|ref\|YP_425603.1\| hypothetical protein Rru_A0512 [Rhodospirillum rubrum ATCC 11170], gi\|8...	252.0	[0..273]	[532..42]
gi\|57019894, gi\|... - gi\|57168613\|ref\|ZP_00367745.1\| conserved hypothetical protein [Campylobacter coli RM2228], gi\|570198...	235.0	[0..276]	[532..37]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNDSGGVA AKHGFLFQDC VAAYHVTRML RDKTIRSVRC EVTDDIDIVS DGYIDFVQVK  60
   61 STGKTRWNIS DIVQNSKGAD KKTIPCSSIL HKSMQCESDL SLGRRYSIVT EEKVNKTLEY 120
  121 LTISPNARLD KPGRQELIDD LNKRTDNFLT DSGISVSDWI DAATWEVFSS LRELELLGIK 180
  181 NIRLASQDLH GVILSSETVA EDIWCRILDT VTRKGEHSRR IHSADDKSYL RPDLLEWFKQ 240
  241 RVEDDQSRSG RKIYVKRDLP HILTPFRAPM ASVCAKR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [278-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGQVLHQQYS LKKYRYKHIA DNVCQWLDEV FLRPKEMSDI HKLTFIEKRE RLKNSVFKSL  60
   61 HDVSEFLGRV LLHATIRQHH ESQPIPCMLY VEKAGAEKIL ENVHIVRRDP EGDQLWIGFS 120
  121 ELVTDINIAV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [408-538]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLPEIRDQLY EDISDCIDTA RKKILDIKDD NYLLRHDIDE ILDGSQPFDA HLDRFTFVLF  60
   61 VGYDSNLLTE PETPGFEDDL EKETAVLFEK FAADLIEDSP FANLCIHVFI YPAPSLERLT 120
  121 QLVDEKVREV V

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits