YRC Public Data Repository - Protein Structure Prediction

Protein:	YFJK_ECOLI
Organism:	Escherichia coli
Length:	729 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFJK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|115396706, gi... - gi\|115396706\|ref\|XP_001213992.1\| hypothetical protein ATEG_04814 [Aspergillus terreus NIH2624], gi\|1...	326.0	[0..8]	[728..1036]
gi\|83771198 - gi\|83771198\|dbj\|BAE61330.1\| unnamed protein product [Aspergillus oryzae] gi\|169775993 - gi\|169775993\|ref\|XP_001822463.1\| hypothetical protein [Aspergillus oryzae RIB40]	320.0	[0..8]	[726..1037]
gi\|38106724, gi\|... - gi\|39975899\|ref\|XP_369340.1\| hypothetical protein MG06124.4 [Magnaporthe grisea 70-15], gb\|EAA52996....	316.0	[0..8]	[727..1026]
gi\|70981929, gi\|... - gi\|70981929\|ref\|XP_746493.1\| DEAD/DEAH box helicase [Aspergillus fumigatus Af293], gi\|66844116\|gb\|EA...	316.0	[0..8]	[725..1079]
gi\|119195611, gi... - gi\|90307195\|gb\|EAS36826.1\| hypothetical protein CIMG_02180 [Coccidioides immitis RS], gi\|119195611\|r...	315.0	[0..56]	[728..492]
gi\|49087332, gi\|... - gi\|67522042\|ref\|XP_659082.1\| hypothetical protein AN1478.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	313.0	[0..56]	[728..488]
gi\|46124035, gi\|... - gi\|46124035\|ref\|XP_386571.1\| hypothetical protein FG06395.1 [Gibberella zeae PH-1], gi\|42551756\|gb\|E...	311.0	[0..8]	[725..1031]
gi\|85118504 - gi\|85118504\|ref\|XP_965458.1\| hypothetical protein NCU02685 [Neurospora crassa OR74A] gi\|32422881, gi\|... - gi\|32422881\|ref\|XP_331884.1\| hypothetical protein [Neurospora crassa], gi\|28927267\|gb\|EAA36222.1\| hy...	307.0	[0..50]	[728..480]
gi\|38567201 - gi\|38567201\|emb\|CAE76494.1\| related to ATP dependent RNA helicase [Neurospora crassa]	307.0	[0..50]	[728..480]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEIYEQAKH SLQGEDFSSF NYLFAVNKLL SNPVSYDLGR DLIVRALDSR ERFSEHTTIL  60
   61 KNMVRKSGLF PY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [73-647]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKKEFTSLTP DDLRVLELYR TPFSDGYVFH SMQFHIFDLL KSGQNVVLSA PTSMGKSAIV  60
   61 DSLLGMGTLK RLVLVVPTVA LADETRRRLQ ERFGDRYQII HHSSQVCHSD QAVYVLTQER 120
  121 VNERDDIVDI DLFVIDEFYK LAFRQLKSGD IDHQDERVIE LNIALSKLLK VSRQFYLTGP 180
  181 FVNSIRGLEK LGYPHTFVST DFNTVALDVK TFGIKANDDK AKLKALGEIA HACVDATIIY 240
  241 CKSPTVAGLV ARELIRLGHG TPTENPHVDW VSEEFDADWD YTVALRNGIG LHFGALPRAL 300
  301 QQYTADQFNA GKLRFLLCTS TIIEGVNTIA KNVVIYDNRD GTRSIDKFTH GNIKGRAGRM 360
  361 GVHFVGKIFC LEEIPEDNLN QEVDIPLGIQ GIDTPINLLA SVQPDHLSEF SQDRFDEVFI 420
  421 NDRVSIDLVK KHSYFRVEQF EMLQSMFEMM DDNEFSSLVF HWTPATNFLK TFAKIIARLV 480
  481 PHTFSRNGVP VKPTDVMIAK LAGYLSAESY SEYLKNQIDY ARQWISEGEK RTLSIALNND 540
  541 LKLITNTFGY TLPKVLSLME DVVKHHAVKR GIRSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	2p6rA
Description:	No description for 2p6rA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.470983068319171	bayes_pls_golite062009
hydrolase activity	0.0582794297634999	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [648-729]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDYTHVKLAF ESFHLPPGVN ALEEIGIPIQ TLHRLVDLLE FSDEADVDEL SQYLRDTQDI  60
   61 WSRSIGYVDQ MFIRRALGIR RH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.522879
Match:	2q0zX
Description:	No description for 2q0zX was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.210430303475354	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: