YRC Public Data Repository - Protein Structure Prediction

Protein:	YFIN_ECOLI
Organism:	Escherichia coli
Length:	408 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFIN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77976247 - gi\|77976247\|ref\|ZP_00831754.1\| COG2199: FOG: GGDEF domain [Yersinia intermedia ATCC 29909]	282.0	[0..3]	[401..13]
gi\|145600440, gi... - gi\|145600440\|ref\|YP_001164516.1\| hypothetical protein YPDSF_3185 [Yersinia pestis Pestoides F], gi\|1... gi\|162419428, gi... - gi\|162419428\|ref\|YP_001605395.1\| GGDEF domain-containing protein [Yersinia pestis Angola], gi\|162352... gi\|165920781, gi... - gi\|165927319\|ref\|ZP_02223151.1\| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar O... gi\|165936365, gi... - gi\|165936365\|ref\|ZP_02224933.1\| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar O... gi\|229696699, gi... - gi\|229840333\|ref\|ZP_04460492.1\| putative exported protein [Yersinia pestis biovar Orientalis str. PE... gi\|166008970, gi... - gi\|166008970\|ref\|ZP_02229868.1\| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar A... gi\|229842413, gi... - gi\|229842413\|ref\|ZP_04462568.1\| putative exported protein [Yersinia pestis biovar Orientalis str. In... gi\|166206882, gi... - gi\|166212136\|ref\|ZP_02238171.1\| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar A... gi\|108810030, gi... - gi\|108810030\|ref\|YP_653946.1\| hypothetical protein YPA_4040 [Yersinia pestis Antiqua], gi\|108781943\|... gi\|167401527, gi... - gi\|167401527\|ref\|ZP_02307021.1\| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar A... gi\|167418912, gi... - gi\|167418912\|ref\|ZP_02310665.1\| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar O... gi\|167468844 - gi\|167468844\|ref\|ZP_02333548.1\| putative diguanylate cyclase, GGDEF domain [Yersinia pestis FV-1] gi\|186893943, gi... - gi\|186893943\|ref\|YP_001871055.1\| diguanylate cyclase [Yersinia pseudotuberculosis PB1/+], gi\|1866969... gi\|229705914, gi... - gi\|229836971\|ref\|ZP_04457136.1\| putative exported protein [Yersinia pestis Pestoides A], gi\|22970591...	276.0	[0..2]	[403..12]
gi\|77635652 - gi\|77635652\|ref\|ZP_00797734.1\| COG2199: FOG: GGDEF domain [Yersinia pestis Angola] gi\|117674929, gi... - gi\|77631578\|ref\|ZP_00794164.1\| COG2199: FOG: GGDEF domain [Yersinia pseudotuberculosis IP 31758], gi... gi\|89104412 - gi\|89104412\|ref\|ZP_01176956.1\| COG2199: FOG: GGDEF domain [Yersinia pestis biovar Orientalis str. IP... gi\|229682012, gi... - gi\|229900673\|ref\|ZP_04515797.1\| putative exported protein [Yersinia pestis Nepal516], gi\|229682012\|g... gi\|21960713, gi\|... - gi\|22127604\|ref\|NP_671027.1\| hypothetical protein y3730 [Yersinia pestis KIM], gi\|21960713\|gb\|AAM872... gi\|25509696 - pir\|\|AF0055 probable exported protein YPO0449 [imported] - Yersinia pestis (strain CO92) gi\|51594943, gi\|... - gi\|51594943\|ref\|YP_069134.1\| hypothetical protein YPTB0592 [Yersinia pseudotuberculosis IP 32953], g... gi\|45438335, gi\|... - gi\|45443466\|ref\|NP_995005.1\| hypothetical protein YP_3734 [Yersinia pestis biovar Microtus str. 9100... gi\|15978541, gi\|... - gi\|218927646\|ref\|YP_002345521.1\| hypothetical protein YPO0449 [Yersinia pestis CO92], gi\|16120778\|re... gi\|167054924, gi... - gi\|167426001\|ref\|ZP_02317754.1\| ggdef domain protein [Yersinia pestis biovar Mediaevalis str. K19730... Q66EU9\|Q66EU9_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis	274.0	[0..2]	[403..4]
gi\|77960200 - gi\|77960200\|ref\|ZP_00824085.1\| COG2199: FOG: GGDEF domain [Yersinia mollaretii ATCC 43969]	274.0	[0..4]	[407..14]
gi\|78363780, gi\|... - gi\|78485494\|ref\|YP_391419.1\| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena XCL-2],...	271.0	[0..103]	[404..894]
gi\|95133648, gi\|... - gi\|95930396\|ref\|ZP_01313133.1\| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfu...	270.0	[0..14]	[404..272]
gi\|74022756, gi\|... - gi\|89902242\|ref\|YP_524713.1\| diguanylate cyclase with PAS/PAC sensor [Rhodoferax ferrireducens T118]...	270.0	[0..57]	[406..195]
gi\|83310313, gi\|... - gi\|83310313\|ref\|YP_420577.1\| signal transduction protein [Magnetospirillum magneticum AMB-1], gi\|829...	270.0	[0..58]	[404..234]
gi\|23011596 - gi\|23011596\|ref\|ZP_00051909.1\| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]	269.0	[0..48]	[406..25]

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Predicted Domain #1

Region A:
Residues: [1-408]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDNDNSLNK RPTFKRALRN ISMTSIFITM MLIWLLLSVT SVLTLKQYAQ KNLALTAATM  60
   61 TYSLEAAVVF ADGPAATETL AALGQQGQFS TAEVRDKQQN ILASWHYTRK DPGDTFSNFI 120
  121 SHWLFPAPII QPIRHNGETI GEVRLTARDS SISHFIWFSL AVLTGCILLA SGIAITLTRH 180
  181 LHNGLVEALK NITDVVHDVR SNRNFSRRVS EERIAEFHRF ALDFNSLLDE MEEWQLRLQA 240
  241 KNAQLLRTAL HDPLTGLANR AAFRSGINTL MNNSDARKTS ALLFLDGDNF KYINDTWGHA 300
  301 TGDRVLIEIA KRLAEFGGLR HKAYRLGGDE FAMVLYDVQS ESEVQQICSA LTQIFNLPFD 360
  361 LHNGHQTTMT LSIGYAMTIE HASAEKLQEL ADHNMYQAKH QRAEKLVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.154902
Match:	1w25A
Description:	Response regulator PleD in complex with c-diGMP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits