YRC Public Data Repository - Protein Structure Prediction

Protein:	YFDY_ECOLI
Organism:	Escherichia coli
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFDY_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|194418902, gi... - gi\|83570025\|ref\|ZP_00921472.1\| hypothetical protein Sdys1_01001614 [Shigella dysenteriae 1012], gi\|1... gi\|74312925, gi\|... - gi\|74312925\|ref\|YP_311344.1\| hypothetical protein SSON_2468 [Shigella sonnei Ss046], gi\|73856402\|gb\|... gi\|157067529, gi... - gi\|157161849\|ref\|YP_001459167.1\| hypothetical protein EcHS_A2513 [Escherichia coli HS], gi\|157067529... gi\|218361687, gi... - gi\|218554919\|ref\|YP_002387832.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|209919865, gi... - gi\|209919865\|ref\|YP_002293949.1\| hypothetical protein ECSE_2674 [Escherichia coli SE11], gi\|20991312... gi\|218705894, gi... - gi\|218705894\|ref\|YP_002413413.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218700846, gi... - gi\|218700846\|ref\|YP_002408475.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|124501994, gi... - gi\|124526523\|ref\|ZP_01698476.1\| conserved hypothetical protein [Escherichia coli B], gi\|124501994\|gb... gi\|187427312, gi... - gi\|187730320\|ref\|YP_001881185.1\| hypothetical protein SbBS512_E2745 [Shigella boydii CDC 3083-94], g... gi\|170683405, gi... - gi\|170683405\|ref\|YP_001744571.1\| hypothetical protein EcSMS35_2528 [Escherichia coli SMS-3-5], gi\|17... gi\|191165547, gi... - gi\|191165547\|ref\|ZP_03027388.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190904470\|... gi\|110806329, gi... - gi\|110806329\|ref\|YP_689849.1\| hypothetical protein SFV_2435 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|188488392, gi... - gi\|188493193\|ref\|ZP_03000463.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848839... gi\|192956973, gi... - gi\|193069771\|ref\|ZP_03050722.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192956... gi\|193062444, gi... - gi\|193062444\|ref\|ZP_03043539.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192932110\|... gi\|194420928, gi... - gi\|194440145\|ref\|ZP_03072194.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442092... gi\|194428638, gi... - gi\|194428638\|ref\|ZP_03061176.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194413361... gi\|82777781, gi\|... - gi\|82777781\|ref\|YP_404130.1\| hypothetical protein SDY_2575 [Shigella dysenteriae Sd197], gi\|81241929... gi\|251785722, gi... - gi\|251785722\|ref\|YP_003000026.1\| hypothetical protein B21_02248 [Escherichia coli BL21], gi\|24237799... gi\|24052812, gi\|... - gi\|24113737\|ref\|NP_708247.1\| hypothetical protein SF2443 [Shigella flexneri 2a str. 301], gi\|2405281... gi\|253772714, gi... - gi\|254289131\|ref\|YP_003054879.1\| predicted inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|30042038, gi\|... - gi\|30063783\|ref\|NP_837954.1\| hypothetical protein S2581 [Shigella flexneri 2a str. 2457T], gi\|300420... gi\|169754259, gi... - gi\|170019331\|ref\|YP_001724285.1\| hypothetical protein EcolC_1292 [Escherichia coli ATCC 8739], gi\|16... gi\|254162370, gi... - gi\|254162370\|ref\|YP_003045478.1\| predicted inner membrane protein [Escherichia coli B str. REL606], ...	104.0	[0..1]	[80..1]
gi\|82544845, gi\|... - gi\|82544845\|ref\|YP_408792.1\| hypothetical protein SBO_2403 [Shigella boydii Sb227], gi\|81246256\|gb\|A...	104.0	[0..1]	[80..1]
gi\|208727705, gi... - gi\|208807904\|ref\|ZP_03250241.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208812878, gi... - gi\|208812878\|ref\|ZP_03254207.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208740273, gi... - gi\|208820150\|ref\|ZP_03260470.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209397382, gi... - gi\|209397382\|ref\|YP_002271862.1\| hypothetical protein ECH74115_3608 [Escherichia coli O157:H7 str. E... gi\|13362727, gi\|... - gi\|15832511\|ref\|NP_311284.1\| hypothetical protein ECs3257 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189002001, gi... - gi\|189002001\|gb\|EDU70987.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168787292, gi... - gi\|189372798\|gb\|EDU91214.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168800715, gi... - gi\|189377023\|gb\|EDU95439.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|254593738, gi... - gi\|254794338\|ref\|YP_003079175.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|195938731 - gi\|195938731\|ref\|ZP_03084113.1\| hypothetical protein EscherichcoliO157_20278 [Escherichia coli O157:... gi\|168757424, gi... - gi\|189355598\|gb\|EDU74017.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168763555, gi... - gi\|189366332\|gb\|EDU84748.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168770948, gi... - gi\|189360197\|gb\|EDU78616.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168772787, gi... - gi\|187771048\|gb\|EDU34892.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168748333, gi... - gi\|188017174\|gb\|EDU55296.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|209764476, gi... - pir\|\|C85880 hypothetical protein Z3642 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12516751, gi\|... - gi\|15802919\|ref\|NP_288947.1\| hypothetical protein Z3642 [Escherichia coli O157:H7 EDL933], gi\|125167... gi\|13362727, gi\|... - gi\|15832511\|ref\|NP_311284.1\| hypothetical protein ECs3257 [Escherichia coli O157:H7], gi\|13362727\|db... gi\|217327413, gi... - gi\|217327413\|ref\|ZP_03443496.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458...	103.0	[0..1]	[80..1]
gi\|237704904, gi... - gi\|237704904\|ref\|ZP_04535385.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|218366101, gi... - gi\|218559332\|ref\|YP_002392245.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|91073294, gi\|... - gi\|91211720\|ref\|YP_541706.1\| hypothetical protein UTI89_C2709 [Escherichia coli UTI89], gi\|91073294\|...	102.0	[0..1]	[80..1]
gi\|191173809, gi... - gi\|75237943\|ref\|ZP_00721950.1\| hypothetical protein EcolF_01003652 [Escherichia coli F11], gi\|191173... gi\|110642567, gi... - gi\|110642567\|ref\|YP_670297.1\| hypothetical protein ECP_2403 [Escherichia coli 536], gi\|110344159\|gb\|... gi\|227835777, gi... - gi\|227887427\|ref\|ZP_04005232.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783577... gi\|215487641, gi... - gi\|215487641\|ref\|YP_002330072.1\| predicted inner membrane protein [Escherichia coli O127:H6 str. E23... gi\|26109162, gi\|... - gi\|26248756\|ref\|NP_754796.1\| hypothetical protein c2914 [Escherichia coli CFT073], gi\|26109162\|gb\|AA...	102.0	[0..1]	[80..1]
gi\|75187142 - gi\|75187142\|ref\|ZP_00700409.1\| hypothetical protein EcolE_01000368 [Escherichia coli E24377A]	99.0	[0..6]	[80..1]
gi\|213850207 - gi\|213850207\|ref\|ZP_03381105.1\| hypothetical protein SentesT_00883 [Salmonella enterica subsp. enter... gi\|213982683 - gi\|213982683\|ref\|ZP_03409942.1\| hypothetical protein Salmonellaentericaenterica_53456 [Salmonella en... gi\|214000487 - gi\|214000487\|ref\|ZP_03411222.1\| hypothetical protein Salmonellentericaenterica_07616 [Salmonella ent... gi\|224467592, gi... - gi\|224583065\|ref\|YP_002636863.1\| hypothetical protein SPC_1258 [Salmonella enterica subsp. enterica ... gi\|213424968 - gi\|213424968\|ref\|ZP_03357718.1\| hypothetical protein SentesTyphi_04265 [Salmonella enterica subsp. e... gi\|213579781 - gi\|213579781\|ref\|ZP_03361607.1\| hypothetical protein SentesTyph_00677 [Salmonella enterica subsp. en... gi\|213609119 - gi\|213609119\|ref\|ZP_03368945.1\| hypothetical protein SentesTyp_00669 [Salmonella enterica subsp. ent... gi\|213647154 - gi\|213647154\|ref\|ZP_03377207.1\| hypothetical protein SentesTy_07520 [Salmonella enterica subsp. ente... gi\|205353514, gi... - gi\|205353514\|ref\|YP_002227315.1\| hypothetical protein SG2436 [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=STM14_2951] [protein=putative inner membrane protein] [protein_id=YP_005238485.1] [location=co... gi\|206709622, gi... - gi\|207857819\|ref\|YP_002244470.1\| hypothetical protein SEN2386 [Salmonella enterica subsp. enterica s... gi\|213051885 - gi\|213051885\|ref\|ZP_03344763.1\| hypothetical protein Salmoneentericaenterica_02485 [Salmonella enter... gi\|213421528 - gi\|213421528\|ref\|ZP_03354594.1\| hypothetical protein Salmonentericaenterica_28889 [Salmonella enteri... gi\|197263144, gi... - gi\|197263144\|ref\|ZP_03163218.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197361636, gi... - gi\|197361636\|ref\|YP_002141272.1\| hypothetical protein SSPA0427 [Salmonella enterica subsp. enterica ... gi\|197940376, gi... - gi\|198245860\|ref\|YP_002216473.1\| hypothetical protein SeD_A2760 [Salmonella enterica subsp. enterica... gi\|200389084, gi... - gi\|200389084\|ref\|ZP_03215696.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|16420944, gi\|... - gi\|16765726\|ref\|NP_461341.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164209... gi\|29140979, gi\|... - gi\|29140979\|ref\|NP_804321.1\| hypothetical protein t0458 [Salmonella enterica subsp. enterica serovar... gi\|25512086, gi\|... - gi\|25512086\|pir\|\|AC0807 conserved hypothetical protein STY2638 [imported] - Salmonella enterica subs... gi\|16761325 - gi\|16761325\|ref\|NP_456942.1\| hypothetical protein STY2638 [Salmonella enterica subsp. enterica serov... gi\|194402852, gi... - gi\|194444189\|ref\|YP_002041663.1\| hypothetical protein SNSL254_A2589 [Salmonella enterica subsp. ente... gi\|194408083, gi... - gi\|194449779\|ref\|YP_002046466.1\| hypothetical protein SeHA_C2654 [Salmonella enterica subsp. enteric... gi\|194458117, gi... - gi\|194471753\|ref\|ZP_03077737.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194713166, gi... - gi\|194737664\|ref\|YP_002115468.1\| hypothetical protein SeSA_A2630 [Salmonella enterica subsp. enteric... gi\|205338414, gi... - gi\|205338414\|gb\|EDZ25178.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205349522, gi... - gi\|205349522\|gb\|EDZ36153.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|62128604, gi\|... - gi\|62180971\|ref\|YP_217388.1\| hypothetical protein SC2401 [Salmonella enterica subsp. enterica serova... gi\|168465881, gi... - gi\|195631456\|gb\|EDX50016.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|56412702, gi\|... - gi\|56412702\|ref\|YP_149777.1\| hypothetical protein SPA0460 [Salmonella enterica subsp. enterica serov... gi\|205344877, gi... - gi\|205344877\|gb\|EDZ31641.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205325312, gi... - gi\|205325312\|gb\|EDZ13151.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205328796, gi... - gi\|205328796\|gb\|EDZ15560.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205335756, gi... - gi\|205335756\|gb\|EDZ22520.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197289712, gi... - gi\|197289712\|gb\|EDY29075.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161612858, gi... - gi\|161612858\|ref\|YP_001586823.1\| hypothetical protein SPAB_00563 [Salmonella enterica subsp. enteric...	99.0	[0..1]	[80..1]
gi\|75235565 - gi\|75235565\|ref\|ZP_00719756.1\| hypothetical protein EcolE1_01002744 [Escherichia coli E110019] gi\|75231335 - gi\|75231335\|ref\|ZP_00717723.1\| hypothetical protein EcolB7_01000484 [Escherichia coli B7A] gi\|75210167 - gi\|75210167\|ref\|ZP_00710339.1\| hypothetical protein EcolB_01002722 [Escherichia coli B171] gi\|75196400 - gi\|75196400\|ref\|ZP_00706470.1\| hypothetical protein EcolH_01002208 [Escherichia coli HS] gi\|75177848 - gi\|75177848\|ref\|ZP_00697910.1\| hypothetical protein SboyB_01002053 [Shigella boydii BS512] gi\|83584539 - gi\|83584539\|ref\|ZP_00923214.1\| hypothetical protein Ecol1_01004251 [Escherichia coli 101-1] gi\|75515723 - gi\|75515723\|ref\|ZP_00737858.1\| hypothetical protein Ecol5_01000304 [Escherichia coli 53638] gi\|75259819 - gi\|75259819\|ref\|ZP_00731121.1\| hypothetical protein EcolE2_01000736 [Escherichia coli E22]	99.0	[0..6]	[80..1]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINLWMFLAL CIVCVSGYIG QVLNVVSAVS SFFGMVILAA LIYYFTMWLT GGNELVTGIF  60
   61 MFLAPACGLM IRFMVGYGRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits