YRC Public Data Repository - Protein Structure Prediction

Protein:	YFDX_ECOLI
Organism:	Escherichia coli
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFDX_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|189366353, gi... - gi\|189366353\|gb\|EDU84769.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|15802917, gi\|... - gi\|15802917\|ref\|NP_288945.1\| hypothetical protein Z3640 [Escherichia coli O157:H7 EDL933], gi\|125167... gi\|226901266, gi... - gi\|237704900\|ref\|ZP_04535381.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|218559330, gi... - gi\|218559330\|ref\|YP_002392243.1\| hypothetical protein ECS88_2570 [Escherichia coli S88], gi\|21836609... YFDX_ECO57 - Protein YfdX OS=Escherichia coli O157:H7 GN=yfdX PE=3 SV=1 gi\|217326662, gi... - gi\|217326662\|ref\|ZP_03442745.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|91073292, gi\|... - gi\|91211718\|ref\|YP_541704.1\| hypothetical protein UTI89_C2707 [Escherichia coli UTI89], gi\|91073292\|... gi\|168800712, gi... - gi\|189377058\|gb\|EDU95474.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|15832509, gi\|... - gi\|15832509\|ref\|NP_311282.1\| hypothetical protein ECs3255 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189372955, gi... - gi\|189372955\|gb\|EDU91371.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|209764494, gi... - pir\|\|A85880 hypothetical protein Z3640 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|115513717, gi... - gi\|117624593\|ref\|YP_853506.1\| hypothetical protein APECO1_4161 [Escherichia coli APEC O1], gi\|115513...	275.0	[0..1]	[211..1]
gi\|157067528, gi... - gi\|75196399\|ref\|ZP_00706469.1\| COG1511: Predicted membrane protein [Escherichia coli HS], gi\|1571618... gi\|75210166, gi\|... - gi\|75210166\|ref\|ZP_00710338.1\| COG1511: Predicted membrane protein [Escherichia coli B171], gi\|19442... gi\|187730915, gi... - gi\|75177849\|ref\|ZP_00697911.1\| COG1511: Predicted membrane protein [Shigella boydii BS512], gi\|18773... gi\|75187141, gi\|... - gi\|75187141\|ref\|ZP_00700408.1\| COG1511: Predicted membrane protein [Escherichia coli E24377A], gi\|15... gi\|75515722, gi\|... - gi\|75515722\|ref\|ZP_00737857.1\| COG1511: Predicted membrane protein [Escherichia coli 53638], gi\|1884... gi\|81241927, gi\|... - gi\|82777779\|ref\|YP_404128.1\| hypothetical protein SDY_2573 [Shigella dysenteriae Sd197], gi\|81241927... gi\|190904486, gi... - gi\|75231336\|ref\|ZP_00717724.1\| COG1511: Predicted membrane protein [Escherichia coli B7A], gi\|191165... gi\|192931910, gi... - gi\|75259818\|ref\|ZP_00731120.1\| COG1511: Predicted membrane protein [Escherichia coli E22], gi\|193062... gi\|218696017, gi... - gi\|218696017\|ref\|YP_002403684.1\| hypothetical protein EC55989_2669 [Escherichia coli 55989], gi\|2183... gi\|81246254, gi\|... - gi\|82544843\|ref\|YP_408790.1\| hypothetical protein SBO_2401 [Shigella boydii Sb227], gi\|81246254\|gb\|A... gi\|209919863, gi... - gi\|209919863\|ref\|YP_002293947.1\| hypothetical protein ECSE_2672 [Escherichia coli SE11], gi\|20991312... gi\|218361685, gi... - gi\|218554917\|ref\|YP_002387830.1\| hypothetical protein ECIAI1_2440 [Escherichia coli IAI1], gi\|218361... gi\|242377993, gi... - gi\|251785720\|ref\|YP_003000024.1\| hypothetical protein B21_02246 [Escherichia coli BL21], gi\|24237799... gi\|253974269, gi... - gi\|254162368\|ref\|YP_003045476.1\| hypothetical protein ECB_02285 [Escherichia coli B str. REL606], gi... gi\|169754261, gi... - gi\|170019333\|ref\|YP_001724287.1\| hypothetical protein EcolC_1294 [Escherichia coli ATCC 8739], gi\|16... gi\|253323760, gi... - gi\|254289129\|ref\|YP_003054877.1\| hypothetical protein ECD_02285 [Escherichia coli BL21(DE3)], gi\|253... gi\|194418808, gi... - gi\|83570026\|ref\|ZP_00921473.1\| COG1511: Predicted membrane protein [Shigella dysenteriae 1012], gi\|1... gi\|194424859, gi... - gi\|83588378\|ref\|ZP_00927003.1\| COG1511: Predicted membrane protein [Escherichia coli 101-1], gi\|1944... gi\|124501993, gi... - gi\|124526522\|ref\|ZP_01698475.1\| conserved hypothetical protein [Escherichia coli B], gi\|124501993\|gb...	271.0	[0..1]	[211..1]
gi\|75237942, gi\|... - gi\|75237942\|ref\|ZP_00721949.1\| COG1511: Predicted membrane protein [Escherichia coli F11], gi\|191173... gi\|227835774, gi... - gi\|227887424\|ref\|ZP_04005229.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783577... gi\|26248753, gi\|... - gi\|26248753\|ref\|NP_754793.1\| hypothetical protein c2911 [Escherichia coli CFT073], gi\|26109159\|gb\|AA... gi\|218690518, gi... - gi\|218690518\|ref\|YP_002398730.1\| hypothetical protein ECED1_2822 [Escherichia coli ED1a], gi\|2184280...	270.0	[0..1]	[211..1]
gi\|192956935, gi... - gi\|75235564\|ref\|ZP_00719755.1\| COG1511: Predicted membrane protein [Escherichia coli E110019], gi\|19...	270.0	[0..1]	[211..1]
gi\|24052811, gi\|... - gi\|24113736\|ref\|NP_708246.1\| hypothetical protein SF2442 [Shigella flexneri 2a str. 301], gi\|2405281... gi\|30042036, gi\|... - gi\|30063781\|ref\|NP_837952.1\| hypothetical protein S2579 [Shigella flexneri 2a str. 2457T], gi\|300420... gi\|74312923, gi\|... - gi\|74312923\|ref\|YP_311342.1\| hypothetical protein SSON_2466 [Shigella sonnei Ss046], gi\|73856400\|gb\|... gi\|110806328, gi... - gi\|110806328\|ref\|YP_689848.1\| hypothetical protein SFV_2434 [Shigella flexneri 5 str. 8401], gi\|1106...	269.0	[0..1]	[211..1]
gi\|62129173, gi\|... - gi\|62181540\|ref\|YP_217957.1\| hypothetical protein SC2970 [Salmonella enterica subsp. enterica serova...	248.0	[0..1]	[211..1]
gi\|206710097, gi... - gi\|207858294\|ref\|YP_002244945.1\| hypothetical protein SEN2874 [Salmonella enterica subsp. enterica s... gi\|224584821, gi... - gi\|224584821\|ref\|YP_002638619.1\| hypothetical protein SPC_3090 [Salmonella enterica subsp. enterica ... gi\|197938208, gi... - gi\|198243692\|ref\|YP_002217008.1\| YfdX protein [Salmonella enterica subsp. enterica serovar Dublin st... gi\|200388252, gi... - gi\|200388252\|ref\|ZP_03214864.1\| YfdX protein [Salmonella enterica subsp. enterica serovar Virchow st... gi\|194446773, gi... - gi\|194446773\|ref\|YP_002042283.1\| YfdX protein [Salmonella enterica subsp. enterica serovar Newport s... gi\|197265592, gi... - gi\|197265592\|ref\|ZP_03165666.1\| YfdX protein [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|16766332, gi\|... - gi\|16766332\|ref\|NP_461947.1\| hypothetical protein STM3030 [Salmonella typhimurium LT2], gi\|16421581\|... gi\|205349139, gi... - gi\|205349139\|gb\|EDZ35770.1\| YfdX protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|195633649, gi... - gi\|195633649\|gb\|EDX52063.1\| YfdX protein [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|161936218 - gi\|161936218\|ref\|YP_152053.2\| hypothetical protein SPA2898 [Salmonella enterica subsp. enterica sero... gi\|205327982, gi... - gi\|205327982\|gb\|EDZ14746.1\| YfdX protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|161365339, gi... - gi\|161615975\|ref\|YP_001589940.1\| hypothetical protein SPAB_03774 [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=STM14_3660] [protein=hypothetical protein] [protein_id=YP_005239165.1] [location=complement(32...	245.0	[0..1]	[209..1]
gi\|29143292, gi\|... - gi\|29143292\|ref\|NP_806634.1\| hypothetical protein t2941 [Salmonella enterica subsp. enterica serovar... gi\|16761808 - gi\|16761808\|ref\|NP_457425.1\| hypothetical protein STY3178 [Salmonella enterica subsp. enterica serov... gi\|25358991, gi\|... - gi\|25358991\|pir\|\|AI0869 conserved hypothetical protein STY3178 [imported] - Salmonella enterica subs...	236.0	[0..11]	[209..1]
gi\|56414978, gi\|... - gi\|56414978\|ref\|YP_152053.1\| hypothetical protein SPA2898 [Salmonella enterica subsp. enterica serov... gi\|197363907, gi... - gi\|197363907\|ref\|YP_002143544.1\| hypothetical protein SSPA2701 [Salmonella enterica subsp. enterica ...	236.0	[0..11]	[209..1]
gi\|56543164, gi\|... - gi\|56551590\|ref\|YP_162429.1\| hypothetical protein ZMO0694 [Zymomonas mobilis subsp. mobilis ZM4], gi...	232.0	[0..1]	[206..6]

Back

Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLIMATMV TAILASSTVW AADNAPVAAQ QQTQQVQQTQ KTAAAAERIS EQGLYAMRDV  60
   61 QVARLALFHG DPEKAKELTN EASALLSDDS TEWAKFAKPG KKTNLNDDQY IVINASVGIS 120
  121 ESYVATPEKE AAIKIANEKM AKGDKKGAME ELRLAGVGVM ENQYLMPLKQ TRNALADAQK 180
  181 LLDKKQYYEA NLALKGAEDG IIVDSEALFV N

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits