YRC Public Data Repository - Protein Structure Prediction

Protein:	YFDI_ECOLI
Organism:	Escherichia coli
Length:	443 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFDI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|13957539 - gi\|13957539\|gb\|AAK50574.1\| GtrIV-Sf [Shigella flexneri]	395.0	[0..1]	[431..1]
gi\|116227825, gi... - gi\|67933509\|ref\|ZP_00526624.1\| hypothetical protein AcidDRAFT_0491 [Solibacter usitatus Ellin6076], ...	392.0	[0..24]	[434..23]
gi\|90821191, gi\|... - gi\|90961997\|ref\|YP_535913.1\| hypothetical protein LSL_1022 [Lactobacillus salivarius UCC118], gi\|908...	385.0	[0..8]	[440..17]
gi\|116102273, gi... - gi\|48870167\|ref\|ZP_00322895.1\| hypothetical protein PpenA01001173 [Pediococcus pentosaceus ATCC 2574...	381.0	[0..12]	[440..27]
gi\|47569690, gi\|... - gi\|47569690\|ref\|ZP_00240365.1\| transmembrane protein, putative [Bacillus cereus G9241], gi\|47553658\|...	370.0	[0..24]	[433..30]
gi\|29375470, gi\|... - gi\|29375470\|ref\|NP_814624.1\| hypothetical protein EF0885 [Enterococcus faecalis V583], gi\|29342930\|g... gi\|227175878, gi... - gi\|227554996\|ref\|ZP_03985043.1\| transmembrane protein [Enterococcus faecalis HH22], gi\|227175878\|gb\|...	347.0	[0..25]	[434..44]
gi\|16409903, gi\|... - pir\|\|AH1140 transmembrane protein [imported] - Listeria monocytogenes (strain EGD-e), gi\|16409903\|e... gi\|47016901, gi\|... - gi\|47094761\|ref\|ZP_00232376.1\| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854], ... gi\|126943026, gi... - gi\|254900240\|ref\|ZP_05260164.1\| transmembrane protein [Listeria monocytogenes J0161], gi\|153183962\|r... gi\|254830488, gi... - gi\|254830488\|ref\|ZP_05235143.1\| transmembrane protein [Listeria monocytogenes 10403S], gi\|153195161\|... gi\|133733338, gi... - gi\|254935534\|ref\|ZP_05267231.1\| transmembrane protein [Listeria monocytogenes F6900], gi\|153178650\|r... gi\|224502172 - gi\|224502172\|ref\|ZP_03670479.1\| transmembrane protein [Listeria monocytogenes FSL R2-561] gi\|224500717 - gi\|224500717\|ref\|ZP_03669066.1\| transmembrane protein [Listeria monocytogenes Finland 1988] gi\|254911206 - gi\|254911206\|ref\|ZP_05261218.1\| transmembrane protein [Listeria monocytogenes J2818] gi\|16802570 - gi\|16802570\|ref\|NP_464055.1\| transmembrane protein [Listeria monocytogenes EGD-e] gi\|255028676 - gi\|255028676\|ref\|ZP_05300627.1\| transmembrane protein [Listeria monocytogenes LO28]	345.0	[0..24]	[439..40]
gi\|46880037, gi\|... - gi\|46906772\|ref\|YP_013161.1\| hypothetical protein LMOf2365_0556 [Listeria monocytogenes str. 4b F236...	343.0	[0..4]	[439..22]
gi\|47092792, gi\|... - gi\|47092792\|ref\|ZP_00230576.1\| membrane protein, putative [Listeria monocytogenes str. 4b H7858], gi...	342.0	[0..4]	[439..22]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKAIKVSLY ISFVLIICAL SKNIMMLNTS DFGRAIKPLI EDIPAFTYDL PLLYKLKGHI  60
   61 DSIDSYEYIS SYSYILYTYV LFISIFTEYL DARVLSLFLK VIYIYSLYAI FTSYIKTERY 120
  121 VTLFTFFILA FLMCSSSTLS MFASFYQEQI VIIFLPFLVY SLTCKNNKSM LLLFFSLLII 180
  181 STAKNQFILT PLIVYSYYIF FDRHKLIIKS VICVVCLLAS IFAISYSKGV VELNKYHATY 240
  241 FGSYLYMK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [249-443]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNGYKMPSYV DDKCVGLDAW GNKFDISFGA TPTEVGTECF ESHKDETFSN ALFLLVSKPS  60
   61 TIFKLPFDDG VMSQYKENYF HVYKKLHVIY GESNILTTIT NIKDNIFKNI RFISLLLFFI 120
  121 ASIFIRNNKI KASLFVVSLF GISQFYVSFF GEGYRDLSKH LFGMYFSFDL CLYITVVFLI 180
  181 YKIIQRNQDN SDVKH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.617	d.21.1	Diaminopimelate epimerase-like
View	Download	0.458	d.58.44	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View	Download	0.454	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.449	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.398	a.121.1	Tetracyclin repressor-like, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits