YRC Public Data Repository - Protein Structure Prediction

Protein:	YFCR_ECOLI
Organism:	Escherichia coli
Length:	170 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFCR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|30524677 - gi\|30524677\|emb\|CAC85333.1\| PixA protein [Escherichia coli]	116.0	[0..8]	[170..1]
gi\|237704815, gi... - gi\|237704815\|ref\|ZP_04535296.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|115513648, gi... - gi\|117624524\|ref\|YP_853437.1\| hypothetical protein APECO1_4230 [Escherichia coli APEC O1], gi\|115513...	115.0	[0..5]	[170..14]
gi\|190905114, gi... - gi\|75235760\|ref\|ZP_00719917.1\| hypothetical protein EcolF_01004467 [Escherichia coli F11], gi\|191174... gi\|110344131, gi... - gi\|110642539\|ref\|YP_670269.1\| hypothetical protein ECP_2374 [Escherichia coli 536], gi\|110344131\|gb\|... gi\|91073206, gi\|... - gi\|91211632\|ref\|YP_541618.1\| putative Yfc fimbriae subunit YfcR precursor [Escherichia coli UTI89], ...	114.0	[0..6]	[170..1]
gi\|62129095, gi\|... - gi\|62181462\|ref\|YP_217879.1\| putaive minor fimbrial subunit [Salmonella enterica subsp. enterica ser...	114.0	[0..5]	[170..16]
gi\|227887395, gi... - gi\|227887395\|ref\|ZP_04005200.1\| minor fimbrial subunit [Escherichia coli 83972], gi\|227835745\|gb\|EEJ... gi\|47600720 - gi\|47600720\|emb\|CAE55841.1\| hypothetical protein YfcR fimbrial precusor [Escherichia coli Nissle 191... gi\|47600720 - gi\|47600720\|emb\|CAE55841.1\| hypothetical protein YfcR fimbrial precusor [Escherichia coli Nissle 191...	113.0	[0..5]	[170..14]
gi\|188495212, gi... - gi\|75515700\|ref\|ZP_00737835.1\| hypothetical protein Ecol5_01000281 [Escherichia coli 53638], gi\|1884... gi\|75196378, gi\|... - gi\|75196378\|ref\|ZP_00706448.1\| hypothetical protein EcolH_01002186 [Escherichia coli HS], gi\|1571618... gi\|169754284, gi... - gi\|170019356\|ref\|YP_001724310.1\| putative fimbrial protein [Escherichia coli ATCC 8739], gi\|16975428... gi\|124526499, gi... - gi\|124526499\|ref\|ZP_01698452.1\| putative fimbrial protein [Escherichia coli B], gi\|124501970\|gb\|EAY4...	113.0	[0..6]	[170..1]
FMA_SERMA - Fimbria A protein OS=Serratia marcescens GN=smfA PE=1 SV=1	112.0	[0..6]	[170..1]
gi\|26109129, gi\|... - gi\|26248723\|ref\|NP_754763.1\| hypothetical protein c2881 [Escherichia coli CFT073], gi\|26109129\|gb\|AA...	112.0	[0..6]	[170..1]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGGVMSQKF VVGAGLLVCS VCSLSAMAGS KPVDLILRVL VDAPPPCSIK GSQVEFGNMI  60
   61 ADNVDGTNYR QDAKYTLNCT NSLANDLRMQ LKGNTSTING ETVLSTNITG LGIRIENSAD 120
  121 NSLFAVGENS WTPFNINNQP QLKAVPVKAS GAQLAAGEFN ASLTMVVDYQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	2uy6B
Description:	No description for 2uy6B was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits