YRC Public Data Repository - Protein Structure Prediction

Protein:	YFCM_ECOLI
Organism:	Escherichia coli
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFCM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|253323794, gi... - gi\|254289096\|ref\|YP_003054844.1\| hypothetical protein ECD_02251 [Escherichia coli BL21(DE3)], gi\|253... gi\|242377959, gi... - gi\|251785686\|ref\|YP_002999990.1\| hypothetical protein B21_02211 [Escherichia coli BL21], gi\|24237795... gi\|82544807, gi\|... - gi\|82544807\|ref\|YP_408754.1\| putative transporting ATPase [Shigella boydii Sb227], gi\|81246218\|gb\|AB... gi\|253974236, gi... - gi\|254162335\|ref\|YP_003045443.1\| hypothetical protein ECB_02251 [Escherichia coli B str. REL606], gi... gi\|83588350, gi\|... - gi\|83588350\|ref\|ZP_00926975.1\| COG3101: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|74312843, gi\|... - gi\|74312843\|ref\|YP_311262.1\| putative transporting ATPase [Shigella sonnei Ss046], gi\|73856320\|gb\|AA...	346.0	[0..1]	[182..1]
gi\|157067495, gi... - gi\|75196369\|ref\|ZP_00706439.1\| COG3101: Uncharacterized protein conserved in bacteria [Escherichia c...	344.0	[0..1]	[182..1]
gi\|83570063, gi\|... - gi\|83570063\|ref\|ZP_00921510.1\| COG3101: Uncharacterized protein conserved in bacteria [Shigella dyse...	344.0	[0..1]	[182..1]
gi\|218361649, gi... - gi\|218554881\|ref\|YP_002387794.1\| hypothetical protein ECIAI1_2403 [Escherichia coli IAI1], gi\|218361... gi\|218352657, gi... - gi\|218695925\|ref\|YP_002403592.1\| hypothetical protein EC55989_2570 [Escherichia coli 55989], gi\|2183... gi\|215487539, gi... - gi\|215487539\|ref\|YP_002329970.1\| hypothetical protein E2348C_2466 [Escherichia coli O127:H6 str. E23... gi\|110642530, gi... - gi\|110642530\|ref\|YP_670260.1\| hypothetical protein ECP_2365 [Escherichia coli 536], gi\|110344122\|gb\|... gi\|192931942, gi... - gi\|75259786\|ref\|ZP_00731088.1\| COG3101: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75243137, gi\|... - gi\|75243137\|ref\|ZP_00726843.1\| COG3101: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|191165545, gi... - gi\|75231407\|ref\|ZP_00717795.1\| COG3101: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|194429289, gi... - gi\|75209507\|ref\|ZP_00709732.1\| COG3101: Uncharacterized protein conserved in bacteria [Escherichia c...	344.0	[0..1]	[182..1]
gi\|227887386, gi... - gi\|227887386\|ref\|ZP_04005191.1\| transporting ATPase [Escherichia coli 83972], gi\|227835736\|gb\|EEJ462... gi\|26109120, gi\|... - gi\|26248714\|ref\|NP_754754.1\| hypothetical protein c2872 [Escherichia coli CFT073], gi\|26109120\|gb\|AA...	344.0	[0..1]	[182..1]
gi\|24113698, gi\|... - gi\|24113698\|ref\|NP_708208.1\| putative transporting ATPase [Shigella flexneri 2a str. 301], gi\|240527... gi\|30063752, gi\|... - gi\|30063752\|ref\|NP_837923.1\| putative transporting ATPase [Shigella flexneri 2a str. 2457T], gi\|3004...	344.0	[0..1]	[182..1]
gi\|189002019, gi... - gi\|189002019\|gb\|EDU71005.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189372924, gi... - gi\|189372924\|gb\|EDU91340.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189379019, gi... - gi\|189379019\|gb\|EDU97435.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|195935706 - gi\|195935706\|ref\|ZP_03081088.1\| putative transporting ATPase [Escherichia coli O157:H7 str. EC4024] gi\|168755085, gi... - gi\|189357631\|gb\|EDU76050.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|189368232, gi... - gi\|189368232\|gb\|EDU86648.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189362776, gi... - gi\|189362776\|gb\|EDU81195.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168772941, gi... - gi\|187771306\|gb\|EDU35150.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168748182, gi... - gi\|188017339\|gb\|EDU55461.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|25357343, gi\|... - pir\|\|C85874 probable transporting ATPase Z3589 [imported] - Escherichia coli (strain O157:H7, substr... gi\|15802873, gi\|... - gi\|15802873\|ref\|NP_288900.1\| putative transporting ATPase [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|13362680, gi\|... - gi\|15832464\|ref\|NP_311237.1\| putative transporting ATPase [Escherichia coli O157:H7], gi\|13362680\|db... gi\|217319257, gi... - gi\|217326890\|ref\|ZP_03442973.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|254794219, gi... - gi\|254794219\|ref\|YP_003079056.1\| hypothetical protein ECSP_3201 [Escherichia coli O157:H7 str. TW143... gi\|208726020, gi... - gi\|208806219\|ref\|ZP_03248556.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|13362680, gi\|... - gi\|15832464\|ref\|NP_311237.1\| putative transporting ATPase [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208813938, gi... - gi\|208813938\|ref\|ZP_03255267.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208819181, gi... - gi\|208819181\|ref\|ZP_03259501.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209158004, gi... - gi\|209396604\|ref\|YP_002271736.1\| hypothetical protein ECH74115_3467 [Escherichia coli O157:H7 str. E...	344.0	[0..1]	[182..1]
gi\|77979077, gi\|... - gi\|77979077\|ref\|ZP_00834498.1\| COG3101: Uncharacterized protein conserved in bacteria [Yersinia inte...	343.0	[0..4]	[181..17]
gi\|187431191, gi... - gi\|75177885\|ref\|ZP_00697947.1\| COG3101: Uncharacterized protein conserved in bacteria [Shigella boyd...	343.0	[0..1]	[182..1]
gi\|56412722, gi\|... - gi\|56412722\|ref\|YP_149797.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov... gi\|204321801, gi... - gi\|204929257\|ref\|ZP_03220400.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197093132, gi... - gi\|197361656\|ref\|YP_002141292.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|168817881, gi... - gi\|205344793\|gb\|EDZ31557.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...	343.0	[0..1]	[182..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTHHYEQL IEIFNSCFAD DFNTRLIKGD DEPIYLPADA EVPYNRIVFA HGFYASAIHE  60
   61 ISHWCIAGKA RRELVDFGYW YCPDGRDAQT QSQFEDVEVK PQALDWLFCV AAGYPFNVSC 120
  121 DNLEGDFEPD RVVFQRRVHA QVMDYLTNGI PERPARFIKA LQNYYHTPEL TAEQFPWPEA 180
  181 LN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	153.086186
Match:	PF04315.3
Description:	No description for PF04315.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits