YRC Public Data Repository - Protein Structure Prediction

Protein:	YFCD_ECOLI
Organism:	Escherichia coli
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFCD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|119191718, gi... - gi\|90305251\|gb\|EAS34882.1\| hypothetical protein CIMG_00236 [Coccidioides immitis RS], gi\|119191718\|r...	145.0	[0..2]	[171..48]
gi\|6856556 - gi\|6856556\|gb\|AAF29976.1\|AF188063_1 isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase...	143.0	[0..3]	[178..42]
gi\|9971806 - gi\|9971806\|gb\|AAG10423.1\| isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase [Tagetes ...	142.0	[0..3]	[174..41]
gi\|29468178 - gi\|29468178\|gb\|AAO85433.1\|AF479816_1 isopentenyl diphosphate isomerase [Aspergillus nidulans] gi\|40747522, gi\|... - gi\|67516595\|ref\|XP_658183.1\| hypothetical protein AN0579.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	141.0	[0..2]	[172..51]
gi\|35186998 - gi\|35186998\|gb\|AAQ84167.1\| isopentenyl pyrophosphate isomerase [Pueraria montana var. lobata]	141.0	[0..3]	[177..80]
IDI2_CAMAC - Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1	141.0	[0..3]	[177..88]
gi\|169611682, gi... - gi\|169611682\|ref\|XP_001799259.1\| hypothetical protein SNOG_08955 [Phaeosphaeria nodorum SN15], gi\|11...	141.0	[0..2]	[178..58]
gi\|82501678 - gi\|82501678\|gb\|ABB80114.1\| isopentenyl pyrophosphate isomerase [Haematococcus pluvialis]	140.0	[0..2]	[180..57]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQRRLASTE WVDIVNEENE VIAQASREQM RAQCLRHRAT YIVVHDGMGK ILVQRRTETK  60
   61 DFLPGMLDAT AGGVVQADEQ LLESARREAE EELGIAGVPF AEHGQFYFED KNCRVWGALF 120
  121 SCVSHGPFAL QEDEVSEVCW LTPEEITARC DEFTPDSLKA LALWMKRNAK NEAVETETAE 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.045757
Match:	2fkbA
Description:	Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.86119802438676	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: