YRC Public Data Repository - Protein Structure Prediction

Protein:	ARNT_ECOLI, YFBI...
Organism:	Escherichia coli
Length:	550 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARNT_ECOLI, YFBI....

Description	E-value	Query Range	Subject Range
gi\|254794152, gi... - gi\|254794152\|ref\|YP_003078989.1\| 4-amino-4-deoxy-L-arabinose transferase [Escherichia coli O157:H7 s... gi\|208733633, gi... - gi\|208812356\|ref\|ZP_03253685.1\| undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl ... gi\|208728534, gi... - gi\|208808733\|ref\|ZP_03251070.1\| undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl ... gi\|195935636 - gi\|195935636\|ref\|ZP_03081018.1\| 4-amino-4-deoxy-L-arabinose transferase [Escherichia coli O157:H7 st... gi\|189378958, gi... - gi\|189378958\|gb\|EDU97374.1\| undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl tran... gi\|15832399, gi\|... - gi\|15832399\|ref\|NP_311172.1\| 4-amino-4-deoxy-L-arabinose transferase [Escherichia coli O157:H7 str. ... gi\|217320076, gi... - gi\|217327709\|ref\|ZP_03443792.1\| undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl ... ARNT_ECO5E - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Escherichia coli ... gi\|208738481, gi... - gi\|208818358\|ref\|ZP_03258678.1\| undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl ... gi\|209765334, gi... - pir\|\|H85865 hypothetical protein Z3515 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|189368242, gi... - gi\|189368242\|gb\|EDU86658.1\| undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl tran... gi\|189357626, gi... - gi\|189357626\|gb\|EDU76045.1\| undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl tran... gi\|15802806, gi\|... - gi\|15802806\|ref\|NP_288833.1\| 4-amino-4-deoxy-L-arabinose transferase [Escherichia coli O157:H7 EDL93... gi\|188016126, gi... - gi\|188016126\|gb\|EDU54248.1\| undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl tran... ARNT_ECO57 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Escherichia coli ... gi\|189372930, gi... - gi\|189372930\|gb\|EDU91346.1\| undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl tran... gi\|189002020, gi... - gi\|189002020\|gb\|EDU71006.1\| undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl tran... gi\|168773015, gi... - gi\|187771304\|gb\|EDU35148.1\| undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl tran... gi\|168767885, gi... - gi\|189362803\|gb\|EDU81222.1\| undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl tran...	273.0	[0..1]	[550..1]
ARNT_ECO24 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Escherichia coli ...	272.0	[0..1]	[550..1]
gi\|226901101, gi... - gi\|237704735\|ref\|ZP_04535216.1\| 4-amino-4-deoxy-L-arabinose transferase [Escherichia sp. 3_2_53FAA],... ARNT_ECOUT - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Escherichia coli ... ARNT_ECOK1 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Escherichia coli ...	272.0	[0..1]	[550..1]
gi\|190909649, gi... - gi\|75243072\|ref\|ZP_00726778.1\| COG1807: 4-amino-4-deoxy-L-arabinose transferase and related glycosyl... ARNT_ECOL5 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Escherichia coli ...	272.0	[0..1]	[550..1]
ARNT_SHIBS - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Shigella boydii s... ARNT_ECO7I - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Escherichia coli ...	271.0	[0..1]	[550..1]
ARNT_SHIB3 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Shigella boydii s...	271.0	[0..1]	[550..1]
ARNT_SHIDS - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Shigella dysenter...	271.0	[0..1]	[550..1]
gi\|227835666, gi... - gi\|227887316\|ref\|ZP_04005121.1\| 4-amino-4-deoxy-L-arabinose transferase [Escherichia coli 83972], gi... ARNT_ECOL6 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Escherichia coli ... ARNT_ECOL6 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Escherichia coli ...	271.0	[0..1]	[550..1]
ARNT_ECOSE - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Escherichia coli ... gi\|193062328, gi... - gi\|75259720\|ref\|ZP_00731022.1\| COG1807: 4-amino-4-deoxy-L-arabinose transferase and related glycosyl... gi\|192958415, gi... - gi\|75238045\|ref\|ZP_00722050.1\| COG1807: 4-amino-4-deoxy-L-arabinose transferase and related glycosyl... gi\|190903443, gi... - gi\|75230357\|ref\|ZP_00716847.1\| COG1807: 4-amino-4-deoxy-L-arabinose transferase and related glycosyl... gi\|75211665, gi\|... - gi\|75211665\|ref\|ZP_00711744.1\| COG1807: 4-amino-4-deoxy-L-arabinose transferase and related glycosyl...	271.0	[0..1]	[550..1]
ARNT_SHISS - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Shigella sonnei (...	271.0	[0..1]	[550..1]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVRYLIGL FAFIACYYLL PISTRLLWQP DETRYAEISR EMLASGDWIV PHLLGLRYFE  60
   61 KPIAGYWINS IGQWLFGANN FGVRAGVIFA TLLTAALVTW FTLRLWRDKR LALLATVIYL 120
  121 SLFIVYAIGT YAVLDPFIAF WLVAGMCSFW LAMQAQTWKG KSAGFLLLGI TCGMGVMTKG 180
  181 FLALAVPVLS VLPWVATQKR WKDLFIYGWL AVISCVLTVL PWGLAIAQRE PNFWHYFFWV 240
  241 EHIQRFALDD AQHR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [255-370]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APFWYYVPVI IAGSLPWLGL LPGALYTGWK NRKHSATVYL LSWTIMPLLF FSVAKGKLPT  60
   61 YILSCFASLA MLMAHYALLA AKNNPLALRI NGWINIAFGV TGIIATFVVS PWGPMN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [371-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPVWQTFESY KVFCAWSIFS LWAFFGWYTL TNVEKTWPFA ALCPLGLALL VGFSIPDRVM  60
   61 EGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [434-550]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPQFFVEMTQ ESLQPSRYIL TDSVGVAAGL AWSLQRDDII MYRQTGELKY GLNYPDAKGR  60
   61 FVSGDEFANW LNQHRQEGII TLVLSVDRDE DINSLAIPPA DAIDRQERLV LIQYRPK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.550	c.2.1	NAD(P)-binding Rossmann-fold domains
View	Download	0.632	c.13.2	Anti-sigma factor antagonist SpoIIaa
View	Download	0.577	c.13.2	Anti-sigma factor antagonist SpoIIaa
View	Download	0.515	c.2.1	NAD(P)-binding Rossmann-fold domains
View	Download	0.509	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits