YRC Public Data Repository - Protein Structure Prediction

Protein:	YFAQ_ECOLI
Organism:	Escherichia coli
Length:	549 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFAQ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|74312748, gi\|... - gi\|74312748\|ref\|YP_311167.1\| hypothetical protein SSON_2285 [Shigella sonnei Ss046], gi\|73856225\|gb\|... gi\|75514407, gi\|... - gi\|75514407\|ref\|ZP_00736685.1\| COG5445: Predicted secreted protein [Escherichia coli 53638], gi\|1884... gi\|192931974, gi... - gi\|75259693\|ref\|ZP_00730995.1\| COG5445: Predicted secreted protein [Escherichia coli E22], gi\|193062... gi\|218554789, gi... - gi\|218554789\|ref\|YP_002387702.1\| hypothetical protein ECIAI1_2304 [Escherichia coli IAI1], gi\|218361...	717.0	[0..1]	[549..1]
gi\|157067390, gi... - gi\|75196269\|ref\|ZP_00706339.1\| COG5445: Predicted secreted protein [Escherichia coli HS], gi\|1571617...	715.0	[0..1]	[549..1]
gi\|157080429, gi... - gi\|75187016\|ref\|ZP_00700283.1\| COG5445: Predicted secreted protein [Escherichia coli E24377A], gi\|15...	714.0	[0..1]	[549..1]
gi\|30041912, gi\|... - gi\|30063659\|ref\|NP_837830.1\| hypothetical protein S2435 [Shigella flexneri 2a str. 2457T], gi\|300419... gi\|24113605, gi\|... - gi\|24113605\|ref\|NP_708115.1\| hypothetical protein SF2304 [Shigella flexneri 2a str. 301], gi\|2405266...	713.0	[0..1]	[549..1]
gi\|82776173, gi\|... - gi\|82776173\|ref\|YP_402522.1\| hypothetical protein SDY_0853 [Shigella dysenteriae Sd197], gi\|81240321...	712.0	[0..1]	[549..1]
gi\|75231442, gi\|... - gi\|75231442\|ref\|ZP_00717811.1\| COG5445: Predicted secreted protein [Escherichia coli B7A], gi\|191165...	711.0	[0..1]	[549..1]
gi\|82544545, gi\|... - gi\|82544545\|ref\|YP_408492.1\| hypothetical protein SBO_2086 [Shigella boydii Sb227], gi\|81245956\|gb\|A...	708.0	[0..1]	[549..1]
gi\|227887284, gi... - gi\|227887284\|ref\|ZP_04005089.1\| signal peptide protein [Escherichia coli 83972], gi\|227835634\|gb\|EEJ... gi\|26109020, gi\|... - gi\|26248615\|ref\|NP_754655.1\| hypothetical protein c2769 [Escherichia coli CFT073], gi\|26109020\|gb\|AA...	702.0	[0..1]	[549..1]
gi\|190909511, gi... - gi\|75243042\|ref\|ZP_00726748.1\| COG5445: Predicted secreted protein [Escherichia coli F11], gi\|191169... gi\|110642435, gi... - gi\|110642435\|ref\|YP_670165.1\| hypothetical protein ECP_2270 [Escherichia coli 536], gi\|110344027\|gb\|...	700.0	[0..1]	[549..1]
gi\|226901068, gi... - gi\|237704702\|ref\|ZP_04535183.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|218559144, gi... - gi\|218559144\|ref\|YP_002392057.1\| hypothetical protein ECS88_2375 [Escherichia coli S88], gi\|21836591... gi\|115513545, gi... - gi\|117624421\|ref\|YP_853334.1\| hypothetical protein APECO1_4333 [Escherichia coli APEC O1], gi\|115513...	697.0	[0..1]	[549..1]

Back

Predicted Domain #1

Region A:
Residues: [1-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWRRIVWLL ALVTLPTLAE ETPLQLVLRG AQHDQLYQLS SSGVTKVSAL PDSLTTPLGS  60
   61 LWKLYVYAWL EDTHQPEQPY QCRGNSPEEV YCCQAGESIT RDTALVRSCG LYFAPQRLHI 120
  121 GADVWGQYWQ QRQAPAWLAS LTTLKPETSV TVKSLLDSLA TLPAQNKAQE VLLDVVLDEA 180
  181 KIGVASMLGS RVRVKTWSWF ADDKQEIRQG GFAGWLTDGT PLWVTGSGTS KTVLTRYATV 240
  241 LNRVLPVPTQ VASGQCVEVE LFARYPLKKI TAEKSTTAVN PGVLN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [286-478]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRYRVTFTNG NHITFVSHGE TTLLSEKGKL KLQSHLDREE YVARVLDREA KSTPPEAAKA  60
   61 MTVAIRTFLQ QNANREGDCL TIPDSSATQR VSASPATTGA RTMTAWTQDL IYAGDPVHYH 120
  121 GSRATEGTLS WRQATAQAGQ GERYDQILAF AYPDNSLSRW GAPRSTCQLL PKAKAWLAKK 180
  181 MPQWRRILQA ETG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [479-549]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YNEPDVFAVC RLVSGFPYTD RQQKRLFIRN FFTLQDRLDL THEYLHLAFD GYPTGLDENY  60
   61 IETLTRQLLM D

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits