YRC Public Data Repository - Protein Structure Prediction

Protein:	YFAP_ECOLI
Organism:	Escherichia coli
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFAP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110344026, gi... - gi\|110642434\|ref\|YP_670164.1\| hypothetical protein ECP_2269 [Escherichia coli 536], gi\|110344026\|gb\|... gi\|191170077, gi... - gi\|75243041\|ref\|ZP_00726747.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c...	374.0	[0..1]	[258..1]
gi\|74312747, gi\|... - gi\|74312747\|ref\|YP_311166.1\| hypothetical protein SSON_2284 [Shigella sonnei Ss046], gi\|73856224\|gb\|...	373.0	[0..1]	[258..1]
gi\|218365912, gi... - gi\|218559143\|ref\|YP_002392056.1\| hypothetical protein ECS88_2374 [Escherichia coli S88], gi\|21836591... gi\|117624420, gi... - gi\|117624420\|ref\|YP_853333.1\| hypothetical protein APECO1_4334 [Escherichia coli APEC O1], gi\|115513... gi\|226901067, gi... - gi\|237704701\|ref\|ZP_04535182.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	372.0	[0..1]	[258..1]
gi\|15832362, gi\|... - gi\|15832362\|ref\|NP_311135.1\| hypothetical protein ECs3108 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110806193, gi... - gi\|110806193\|ref\|YP_689713.1\| hypothetical protein SFV_2294 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|217327541, gi... - gi\|217327541\|ref\|ZP_03443624.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|188487327, gi... - gi\|75514408\|ref\|ZP_00736686.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|24052659, gi\|... - gi\|24113604\|ref\|NP_708114.1\| hypothetical protein SF2303 [Shigella flexneri 2a str. 301], gi\|2405265... gi\|25340948, gi\|... - pir\|\|F85861 hypothetical protein Z3478 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15832362, gi\|... - gi\|15832362\|ref\|NP_311135.1\| hypothetical protein ECs3108 [Escherichia coli O157:H7], gi\|13362577\|db... gi\|30063658, gi\|... - gi\|30063658\|ref\|NP_837829.1\| hypothetical protein S2434 [Shigella flexneri 2a str. 2457T], gi\|300419... gi\|15802772, gi\|... - gi\|15802772\|ref\|NP_288799.1\| hypothetical protein Z3478 [Escherichia coli O157:H7 EDL933], gi\|125165... gi\|189372846, gi... - gi\|189372846\|gb\|EDU91262.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168761343, gi... - gi\|189368286\|gb\|EDU86702.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|194433351, gi... - gi\|194433351\|ref\|ZP_03065631.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|189378947, gi... - gi\|189378947\|gb\|EDU97363.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi...	372.0	[0..1]	[258..1]
gi\|75231443, gi\|... - gi\|75231443\|ref\|ZP_00717812.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c...	372.0	[0..1]	[258..1]
gi\|218554788, gi... - gi\|218554788\|ref\|YP_002387701.1\| hypothetical protein ECIAI1_2303 [Escherichia coli IAI1], gi\|218361... gi\|218352564, gi... - gi\|218695832\|ref\|YP_002403499.1\| hypothetical protein EC55989_2474 [Escherichia coli 55989], gi\|2183... gi\|192932117, gi... - gi\|75259692\|ref\|ZP_00730994.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75238016, gi\|... - gi\|75238016\|ref\|ZP_00722021.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75211636, gi\|... - gi\|75211636\|ref\|ZP_00711715.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|157080779, gi... - gi\|75187015\|ref\|ZP_00700282.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|209919678, gi... - gi\|209919678\|ref\|YP_002293762.1\| hypothetical protein ECSE_2487 [Escherichia coli SE11], gi\|20991293...	371.0	[0..1]	[258..1]
gi\|91211519, gi\|... - gi\|91211519\|ref\|YP_541505.1\| hypothetical protein UTI89_C2507 [Escherichia coli UTI89], gi\|91073093\|...	370.0	[0..1]	[258..1]
gi\|227887283, gi... - gi\|227887283\|ref\|ZP_04005088.1\| signal peptide protein [Escherichia coli 83972], gi\|227835633\|gb\|EEJ... gi\|26248614, gi\|... - gi\|26248614\|ref\|NP_754654.1\| hypothetical protein c2768 [Escherichia coli CFT073], gi\|26109019\|gb\|AA...	368.0	[0..1]	[258..1]
gi\|82544546, gi\|... - gi\|82544546\|ref\|YP_408493.1\| hypothetical protein SBO_2087 [Shigella boydii Sb227], gi\|81245957\|gb\|A...	319.0	[0..1]	[237..1]
gi\|68347102, gi\|... - gi\|70732803\|ref\|YP_262570.1\| hypothetical protein PFL_5502 [Pseudomonas fluorescens Pf-5], gi\|683471...	316.0	[0..6]	[258..8]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKIFLPLLL VALSPVAHSE GVQEVEIDAP LSGWHPAEGE DASFSQSINY PASSVNMADD  60
   61 QNISAQIRGK IKNYAAAGKV QQGRLVVNGA SMPQRIESDG SFARPYIFTE GSNSVQVIS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [120-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDGQSRQKMQ FYSTPGTGTI RARLRLVLSW DTDNTDLDLH VVTPDGEHAW YGNTVLKNSG  60
   61 ALDMDVTTGY GPEIFAMPAP IHGRYQVYIN YYGGRSETEL TTAQLTLITD EGSVNEKQET 120
  121 FIVPMRNAGE LTLVKSFDW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.519	N/A	N/A	b.60.1	Lipocalins
View	Download	0.418	N/A	N/A	b.2.2	Carbohydrate-binding domain
View	Download	0.417	N/A	N/A	d.24.1	Pili subunits
View	Download	0.416	N/A	N/A	f.4.1	OMPA-like
View	Download	0.394	N/A	N/A	b.1.12	Purple acid phosphatase, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits