YRC Public Data Repository - Protein Structure Prediction

Protein:	YFAO_ECOLI
Organism:	Escherichia coli
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFAO_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|13362609, gi\|... - gi\|15832393\|ref\|NP_311166.1\| hypothetical protein ECs3139 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254794146, gi... - gi\|254794146\|ref\|YP_003078983.1\| hypothetical protein ECSP_3128 [Escherichia coli O157:H7 str. TW143... gi\|209765388, gi... - pir\|\|B85865 hypothetical protein yfaO [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15802800, gi\|... - gi\|15802800\|ref\|NP_288827.1\| hypothetical protein Z3509 [Escherichia coli O157:H7 EDL933], gi\|125165... NUDI_ECO57 - Nucleoside triphosphatase NudI OS=Escherichia coli O157:H7 GN=nudI PE=3 SV=1 gi\|195935630 - gi\|195935630\|ref\|ZP_03081012.1\| hypothetical protein EscherichcoliO157_04087 [Escherichia coli O157:... NUDI_ECO7I - Nucleoside triphosphatase NudI OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=nudI PE=3 SV=1	116.0	[0..1]	[141..1]
gi\|77996790, gi\|... - gi\|78044675\|ref\|YP_360173.1\| mutator mutT protein [Carboxydothermus hydrogenoformans Z-2901], gi\|779...	116.0	[0..6]	[141..4]
gi\|84667594, gi\|... - gi\|84684615\|ref\|ZP_01012516.1\| mutator mutT protein [Rhodobacterales bacterium HTCC2654], gi\|8466759...	116.0	[0..1]	[139..1]
ADPP_METJA - ADP-ribose pyrophosphatase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / ... ADPP_METJA - ADP-ribose pyrophosphatase OS=Methanocaldococcus jannaschii GN=nudF PE=1 SV=1	116.0	[0..1]	[137..39]
NUDI_ECOL5 - Nucleoside triphosphatase NudI OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=nudI PE=3 SV=1 NUDI_ECOL6 - Nucleoside triphosphatase NudI OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=nud... NUDI_ECOL6 - Nucleoside triphosphatase nudI OS=Escherichia coli O6 GN=nudI PE=3 SV=1 NUDI_ECO81 - Nucleoside triphosphatase NudI OS=Escherichia coli O81 (strain ED1a) GN=nudI PE=3 SV=1	115.0	[0..1]	[141..1]
gi\|113935745, gi... - gi\|113935745\|ref\|ZP_01421642.1\| mutator mutT protein [Caulobacter sp. K31], gi\|113729980\|gb\|EAU11053...	115.0	[0..5]	[141..45]
NUDI_ECOHS - Nucleoside triphosphatase NudI OS=Escherichia coli O9:H4 (strain HS) GN=nudI PE=3 SV=1 sp\|B7UFR3\|NUDI_ECO27 - Nucleoside triphosphatase nudI OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=nudI PE=3 SV=... NUDI_ECOUT - Nucleoside triphosphatase NudI OS=Escherichia coli (strain UTI89 / UPEC) GN=nudI PE=3 SV=1 NUDI_ECO27 - Nucleoside triphosphatase NudI OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=nudI PE=3 SV=... NUDI_ECOSM - Nucleoside triphosphatase NudI OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=nudI PE=3 SV=2 NUDI_ECO45 - Nucleoside triphosphatase NudI OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=nudI PE=3 SV=1 gi\|226901095, gi... - gi\|237704729\|ref\|ZP_04535210.1\| nucleoside triphosphatase nudI [Escherichia sp. 3_2_53FAA], gi\|22690... NUDI_ECOK1 - Nucleoside triphosphatase NudI OS=Escherichia coli O1:K1 / APEC GN=nudI PE=3 SV=1	115.0	[0..1]	[141..1]
NUDI_SALTY - Nucleoside triphosphatase nudI OS=Salmonella typhimurium GN=nudI PE=3 SV=1 NUDI_SALPB - Nucleoside triphosphatase nudI OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nudI PE=3 ... lcl\|NC_016856.1_... - [gene=yfaO] [protein=putative NTP pyrophosphohydrolase] [protein_id=YP_005238368.1] [location=245415... NUDI_SALPB - Nucleoside triphosphatase NudI OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nudI PE=3 ... gi\|197240627, gi... - gi\|197262372\|ref\|ZP_03162446.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar... NUDI_SALTY - Nucleoside triphosphatase nudI OS=Salmonella typhimurium GN=nudI PE=1 SV=1 NUDI_SALDC - Nucleoside triphosphatase NudI OS=Salmonella dublin (strain CT_02021853) GN=nudI PE=3 SV=1 NUDI_SALTY - Nucleoside triphosphatase NudI OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=nu...	115.0	[0..1]	[141..1]
NUDI_SALTI - Nucleoside triphosphatase nudI OS=Salmonella typhi GN=nudI PE=3 SV=1 NUDI_SALPA - Nucleoside triphosphatase nudI OS=Salmonella paratyphi A GN=nudI PE=3 SV=1 gi\|213609360 - gi\|213609360\|ref\|ZP_03369186.1\| hypothetical protein SentesTyp_02008 [Salmonella enterica subsp. ent... NUDI_SALPA - Nucleoside triphosphatase NudI OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=nudI PE=3 SV... gi\|213981923 - gi\|213981923\|ref\|ZP_03409182.1\| hypothetical protein Salmonellaentericaenterica_49101 [Salmonella en... gi\|214003141 - gi\|214003141\|ref\|ZP_03413876.1\| hypothetical protein Salmonellentericaenterica_23786 [Salmonella ent... NUDI_SALPC - Nucleoside triphosphatase NudI OS=Salmonella paratyphi C (strain RKS4594) GN=nudI PE=3 SV=1 gi\|213053534 - gi\|213053534\|ref\|ZP_03346412.1\| hypothetical protein Salmoneentericaenterica_11833 [Salmonella enter... gi\|213421514 - gi\|213421514\|ref\|ZP_03354580.1\| hypothetical protein Salmonentericaenterica_28809 [Salmonella enteri... gi\|213427762 - gi\|213427762\|ref\|ZP_03360512.1\| hypothetical protein SentesTyphi_20540 [Salmonella enterica subsp. e... gi\|213582121 - gi\|213582121\|ref\|ZP_03363947.1\| hypothetical protein SentesTyph_13354 [Salmonella enterica subsp. en... NUDI_SALNS - Nucleoside triphosphatase NudI OS=Salmonella newport (strain SL254) GN=nudI PE=3 SV=1 NUDI_SALPK - Nucleoside triphosphatase NudI OS=Salmonella paratyphi A (strain AKU_12601) GN=nudI PE=3 SV=1 NUDI_SALG2 - Nucleoside triphosphatase NudI OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=nudI PE=3 SV... NUDI_SALEP - Nucleoside triphosphatase NudI OS=Salmonella enteritidis PT4 (strain P125109) GN=nudI PE=3 SV=1 gi\|205325365, gi... - gi\|205325365\|gb\|EDZ13204.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar Sai... gi\|238913504 - gi\|238913504\|ref\|ZP_04657341.1\| putative NTP pyrophosphohydrolase [Salmonella enterica subsp. enteri... gi\|168229661, gi... - gi\|205335829\|gb\|EDZ22593.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar Ken... gi\|168466005, gi... - gi\|195631258\|gb\|EDX49818.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar New... gi\|205344776, gi... - gi\|205344776\|gb\|EDZ31540.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar Wel... gi\|16761221 - gi\|16761221\|ref\|NP_456838.1\| hypothetical protein STY2525 [Salmonella enterica subsp. enterica serov... NUDI_SALTI - Nucleoside triphosphatase NudI OS=Salmonella typhi GN=nudI PE=3 SV=1 gi\|29136709, gi\|... - gi\|29141083\|ref\|NP_804425.1\| hypothetical protein t0568 [Salmonella enterica subsp. enterica serovar...	115.0	[0..1]	[141..1]
NUDI_SALCH - Nucleoside triphosphatase NudI OS=Salmonella choleraesuis (strain SC-B67) GN=nudI PE=3 SV=1 NUDI_SALCH - Nucleoside triphosphatase nudI OS=Salmonella choleraesuis GN=nudI PE=3 SV=1 NUDI_SALCH - Nucleoside triphosphatase nudI OS=Salmonella choleraesuis GN=nudI PE=3 SV=1	114.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQRTIVCPL IQNDGAYLLC KMADDRGVFP GQWAISGGGV EPGERIEEAL RREIREELGE  60
   61 QLLLTEITPW TFSDDIRTKT YADGRKEEIY MIYLIFDCVS ANREVKINEE FQDYAWVKPE 120
  121 DLVHYDLNVA TRKTLRLKGL L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	2pbtA
Description:	No description for 2pbtA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits