YRC Public Data Repository - Protein Structure Prediction

Protein:	YF88_HELPY, Y158...
Organism:	Helicobacter pylori
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YF88_HELPY, Y158....

Description	E-value	Query Range	Subject Range
gi\|7465057 - gi\|7465057\|pir\|\|B71800 hypothetical protein jhp1494 - Helicobacter pylori (strain J99) YF88_HELPJ - UPF0174 protein jhp_1494 OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=jhp_1494 PE=3 SV=1	379.0	[0..1]	[253..1]
gi\|107836198, gi... - gi\|108562425\|ref\|YP_626741.1\| hypothetical protein HPAG1_1536 [Helicobacter pylori HPAG1], gi\|107836...	379.0	[0..1]	[253..1]
gi\|23467301, gi\|... - gi\|23467301\|ref\|ZP_00122884.1\| COG4735: Uncharacterized protein conserved in bacteria [Haemophilus s...	354.0	[0..1]	[242..1]
gi\|254228164, gi... - gi\|75857021\|ref\|ZP_00764641.1\| COG4735: Uncharacterized protein conserved in bacteria [Vibrio sp. Ex...	306.0	[0..1]	[243..1]
gi\|7464009 - gi\|7464009\|pir\|\|E64718 conserved hypothetical protein HP1589 - Helicobacter pylori (strain 26695) gi\|15646205 - gi\|15646205\|ref\|NP_208380.1\| hypothetical protein HP1589 [Helicobacter pylori 26695]	295.0	[0..41]	[248..1]
Y1587_HELPY - UPF0174 protein HP_1587 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_1587 PE=3 SV=2 Y1587_HELPY, YF8... - (O26106) Hypothetical UPF0174 protein HP1587, UPF0174 protein HP_1587 OS=Helicobacter pylori GN=HP_1...	285.0	[0..37]	[241..1]
gi\|41759 - gi\|41759\|emb\|CAA47934.1\| unnamed protein product [Escherichia coli]	272.0	[0..1]	[235..3]

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Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYKYDRDLE FLKQLESSDL LDLFEVLVFG KDGEKRHNEK LTSSIEYKRH GDDYAKYAER  60
   61 IAEELQYYGS NSFASFIKGE GVLYKEILCD VCDKLKVNYN KKTETTLIEQ NMLSKILERS 120
  121 LEEMDDEEVK EMCDELSIKN TDNLNRQALS AATLTLFKMG GFKSYQLAVI VANAVAKTIL 180
  181 GRGLSLAGNQ VLTRTLSFLT GPVGWIITGV WTAIDIAGPA YRVTIPACIV VATLRLKTQQ 240
  241 ANGDKKSLQI ESI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits