YRC Public Data Repository - Protein Structure Prediction

Protein:	YEHS_ECOLI
Organism:	Escherichia coli
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEHS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|68342925, gi\|... - gi\|70728626\|ref\|YP_258375.1\| hypothetical protein PFL_1244 [Pseudomonas fluorescens Pf-5], gi\|683429...	242.0	[0..1]	[153..1]
gi\|89073036, gi\|... - gi\|89073036\|ref\|ZP_01159583.1\| hypothetical protein SKA34_12490 [Photobacterium sp. SKA34], gi\|89051...	242.0	[0..1]	[154..1]
gi\|90439764, gi\|... - gi\|90578931\|ref\|ZP_01234741.1\| hypothetical protein VAS14_04478 [Vibrio angustum S14], gi\|90439764\|g...	241.0	[0..1]	[154..1]
gi\|71558364, gi\|... - gi\|71737811\|ref\|YP_275933.1\| hypothetical protein PSPPH_3795 [Pseudomonas syringae pv. phaseolicola ...	240.0	[0..1]	[153..1]
gi\|66044637, gi\|... - gi\|66044637\|ref\|YP_234478.1\| hypothetical protein Psyr_1389 [Pseudomonas syringae pv. syringae B728a...	239.0	[0..1]	[153..1]
gi\|95112080 - gi\|95112080\|emb\|CAK16807.1\| conserved hypothetical protein [Pseudomonas entomophila L48] gi\|95112080, gi\|... - gi\|95112080\|emb\|CAK16807.1\| conserved hypothetical protein [Pseudomonas entomophila L48], gi\|1047830...	239.0	[0..1]	[153..1]
gi\|110833725, gi... - gi\|110833725\|ref\|YP_692584.1\| hypothetical protein ABO_0864 [Alcanivorax borkumensis SK2], gi\|110646...	237.0	[0..1]	[152..1]
tr\|Q87XZ8\|Q87XZ8... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4022 PE=4 SV=1 gi\|28871165, gi\|... - gi\|28871165\|ref\|NP_793784.1\| hypothetical protein PSPTO_4022 [Pseudomonas syringae pv. tomato str. D...	237.0	[0..1]	[152..1]
gi\|48732806, gi\|... - gi\|77457415\|ref\|YP_346920.1\| hypothetical protein Pfl01_1188 [Pseudomonas fluorescens Pf0-1], gi\|773...	236.0	[0..1]	[153..1]
gi\|68513809, gi\|... - gi\|68548481\|ref\|ZP_00587980.1\| Protein of unknown function DUF1456 [Shewanella amazonensis SB2B], gi...	236.0	[0..1]	[154..35]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSNDILRSV RYILKANNND LVRILALGNV EATAEQIAVW LRKEDEEGFQ RCPDIVLSSF  60
   61 LNGLIYEKRG KDES

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.823909
Match:	PF07308.4
Description:	No description for PF07308.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APALEPERRI NNNIVLKKLR IAFSLKTDDI LAILTEQQFR VSMPEITAMM RAPDHKNFRE  60
   61 CGDQFLRYFL RGLAARQHVK KG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.221849
Match:	PF07308.4
Description:	No description for PF07308.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits