YRC Public Data Repository - Protein Structure Prediction

Protein:	YEHM_ECOLI
Organism:	Escherichia coli
Length:	759 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEHM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26108903, gi\|... - gi\|26248498\|ref\|NP_754538.1\| hypothetical protein c2650 [Escherichia coli CFT073], gi\|26108903\|gb\|AA...	834.0	[0..1]	[759..26]
gi\|75186910, gi\|... - gi\|75186910\|ref\|ZP_00700177.1\| hypothetical protein EcolE_01000136 [Escherichia coli E24377A], gi\|15...	820.0	[0..1]	[759..1]
gi\|157161602, gi... - gi\|75196165\|ref\|ZP_00706235.1\| hypothetical protein EcolH_01001973 [Escherichia coli HS], gi\|1571616...	819.0	[0..1]	[759..1]
gi\|188488188, gi... - gi\|75514134\|ref\|ZP_00736464.1\| hypothetical protein Ecol5_01001958 [Escherichia coli 53638], gi\|1884...	819.0	[0..1]	[759..1]
gi\|75231540, gi\|... - gi\|75231540\|ref\|ZP_00717909.1\| hypothetical protein EcolB7_01000455 [Escherichia coli B7A], gi\|19116...	818.0	[0..1]	[759..1]
gi\|194424936, gi... - gi\|83588102\|ref\|ZP_00926727.1\| hypothetical protein Ecol1_01000488 [Escherichia coli 101-1], gi\|1944...	815.0	[0..1]	[759..1]
gi\|82543487, gi\|... - gi\|82543487\|ref\|YP_407434.1\| hypothetical protein SBO_0943 [Shigella boydii Sb227], gi\|81244898\|gb\|A...	815.0	[0..1]	[759..1]
gi\|56480040, gi\|... - gi\|56480040\|ref\|NP_708008.2\| hypothetical protein SF2189 [Shigella flexneri 2a str. 301], gi\|5638359...	807.0	[0..1]	[759..1]
gi\|191170113, gi... - gi\|75242936\|ref\|ZP_00726642.1\| hypothetical protein EcolF_01000158 [Escherichia coli F11], gi\|191170... gi\|110343919, gi... - gi\|110642327\|ref\|YP_670057.1\| hypothetical protein ECP_2157 [Escherichia coli 536], gi\|110343919\|gb\|...	806.0	[0..1]	[759..1]
gi\|30063553, gi\|... - gi\|30063553\|ref\|NP_837724.1\| hypothetical protein S2314 [Shigella flexneri 2a str. 2457T], gi\|300418...	805.0	[0..1]	[759..1]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPLIVGIR HHSPACARLV KSLIESQRPR YVLIEGPADF NDRVDELFLA HQLPVAIYSY  60
   61 CQYQDGAAP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [70-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRGAWTPFAE FSPEWQALQA ARRIQAQTYF IDLPCWAQSE EEDDSPDTQD ESQALLLRAT  60
   61 RMDNSDTLWD HLFEDESQQT ALPSALAHYF AQLRGDASGD ALNRQREAFM ARWIGWAMQQ 120
  121 NNGDVLVVCG GWHAPALAKM WRECPQKINK PELPSLADAV TGCYLTPY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [238-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEKRLDVLAG YLSGMPAPVW QNWCWQWGLQ KAGEQLLKTI LTRLRQHKLP AS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [290-402]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TADMAAAHLH AMALAQLRGH TLPLRTDWLD AIAGSLIKEA LNAPLPWSYR GVIHPDTDPI  60
   61 LLTLIDTLAG DGFGKLAPST PQPPLPKDVT CELERTAISL PAELTLNRFT PDG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [403-511]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAQSQVLHRL AILEIPGIVR QQGSTLTLAG NGEERWKLTR PLSQHAALIE AACFGATLQE  60
   61 AARNKLEADM LDAGGIGSIT TCLSQAALAG LASFSQQLLE QLTLLIAQE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [512-759]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQFAEMGQAL EVLYALWRLD EISGMQGAQI LQTTLCATID RTLWLCESNG RPDEKEFHAH  60
   61 LHSWQALCHI LRDLHSGVNL PGVSLSAAVA LLERRSQAIH APALDRGAAL GALMRLEHPN 120
  121 ASAEAALTML AQLSPAQSGE ALHGLLALAR HQLACQPAFI AGFSSHLNQL SEADFINALP 180
  181 DLRAAMAWLP PRERGTLAHQ VLEHYQLAQL PVSALQMPLH CPPQAIAHHQ QLEQQALASL 240
  241 QNWGVFHV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits