YRC Public Data Repository - Protein Structure Prediction

Protein:	YEEV_ECOLI
Organism:	Escherichia coli
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEEV_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91210177, gi\|... - gi\|91210177\|ref\|YP_540163.1\| hypothetical protein UTI89_C1149 [Escherichia coli UTI89], gi\|91071751\|...	234.0	[0..1]	[124..1]
gi\|81240464, gi\|... - gi\|82776316\|ref\|YP_402665.1\| hypothetical protein SDY_1009 [Shigella dysenteriae Sd197], gi\|81240464...	234.0	[0..1]	[124..1]
gi\|157067174, gi... - gi\|75196072\|ref\|ZP_00706142.1\| hypothetical protein EcolH_01001878 [Escherichia coli HS], gi\|1571614...	233.0	[0..1]	[124..1]
gi\|83587613, gi\|... - gi\|83587613\|ref\|ZP_00926240.1\| hypothetical protein Ecol1_01001143 [Escherichia coli 101-1], gi\|1944...	232.0	[0..1]	[124..1]
gi\|24528059 - gi\|24528059\|emb\|CAD33789.1\| Z5091 protein [Escherichia coli] gi\|110644001, gi... - gi\|110644001\|ref\|YP_671731.1\| hypothetical protein ECP_3859 [Escherichia coli 536], gi\|110345593\|gb\|...	232.0	[0..1]	[124..1]
gi\|168779821, gi... - gi\|189002617\|gb\|EDU71603.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168772366, gi... - gi\|187771778\|gb\|EDU35622.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189378770, gi... - gi\|189378770\|gb\|EDU97186.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168785554, gi... - gi\|189374306\|gb\|EDU92722.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168753490, gi... - gi\|189359134\|gb\|EDU77553.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168748684, gi... - gi\|188016954\|gb\|EDU55076.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189364485, gi... - gi\|189364485\|gb\|EDU82904.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189369810, gi... - gi\|189369810\|gb\|EDU88226.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|15833793, gi\|... - gi\|15833793\|ref\|NP_312566.1\| hypothetical protein ECs4539 [Escherichia coli O157:H7], gi\|13364014\|db... gi\|195957552, gi... - gi\|3414875\|gb\|AAC31486.1\| L0007 [Escherichia coli], pir\|\|B86043 unknown protein encoded within proph... gi\|15804203, gi\|... - gi\|15804203\|ref\|NP_290242.1\| hypothetical protein Z5091 [Escherichia coli O157:H7 EDL933], gi\|125184... gi\|217324291, gi... - gi\|217324291\|ref\|ZP_03440375.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|209400366, gi... - gi\|209400366\|ref\|YP_002273143.1\| hypothetical protein ECH74115_5036 [Escherichia coli O157:H7 str. E... gi\|15833793, gi\|... - gi\|15833793\|ref\|NP_312566.1\| hypothetical protein ECs4539 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208729079, gi... - gi\|208809278\|ref\|ZP_03251615.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195936225 - gi\|195936225\|ref\|ZP_03081607.1\| hypothetical protein EscherichcoliO157_07123 [Escherichia coli O157:... gi\|208741241, gi... - gi\|208821118\|ref\|ZP_03261438.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208735304, gi... - gi\|208814027\|ref\|ZP_03255356.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|254795617, gi... - gi\|254795617\|ref\|YP_003080454.1\| hypothetical protein ECSP_4656 [Escherichia coli O157:H7 str. TW143...	232.0	[0..1]	[124..1]
gi\|157158025, gi... - gi\|75187770\|ref\|ZP_00701037.1\| hypothetical protein EcolE_01001011 [Escherichia coli E24377A], gi\|15...	232.0	[0..1]	[124..1]
gi\|28316262 - gi\|28316262\|emb\|CAD66207.1\| hypothetical protein [Escherichia coli] gi\|190908567, gi... - gi\|75241923\|ref\|ZP_00725742.1\| hypothetical protein EcolF_01001289 [Escherichia coli F11], gi\|191171... gi\|110640543, gi... - gi\|110640543\|ref\|YP_668271.1\| hypothetical protein ECP_0338 [Escherichia coli 536], gi\|110342135\|gb\|...	232.0	[0..1]	[124..1]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLPVLPGQ AASSRPSPVE IWQILLSRLL DQHYGLTLND TPFADERVIE QHIEAGISLC  60
   61 DAVNFLVEKY ALVRTDQPGF SACTRSQLIN SIDILRARRA TGLMTRDNYR TVNNITLGKY 120
  121 PEAK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	104.638272
Match:	PF06755.3
Description:	No description for PF06755.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits