YRC Public Data Repository - Protein Structure Prediction

Protein:	YEEU_ECOLI
Organism:	Escherichia coli
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEEU_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110343809, gi... - gi\|110642217\|ref\|YP_669947.1\| hypothetical protein ECP_2047 [Escherichia coli 536], gi\|110343809\|gb\|... gi\|91211291, gi\|... - gi\|91211291\|ref\|YP_541277.1\| hypothetical protein UTI89_C2278 [Escherichia coli UTI89], gi\|91072865\|... gi\|26248378, gi\|... - gi\|26248378\|ref\|NP_754418.1\| hypothetical protein c2531 [Escherichia coli CFT073], gi\|26108782\|gb\|AA... gi\|237704461, gi... - gi\|237704461\|ref\|ZP_04534942.1\| intergenic-region protein [Escherichia sp. 3_2_53FAA], gi\|226900827\|...	258.0	[0..1]	[122..1]
gi\|75187726, gi\|... - gi\|75187726\|ref\|ZP_00700993.1\| hypothetical protein EcolE_01000963 [Escherichia coli E24377A], gi\|15...	257.0	[0..1]	[121..1]
gi\|188487874, gi... - gi\|75514045\|ref\|ZP_00736375.1\| hypothetical protein Ecol5_01001869 [Escherichia coli 53638], gi\|1884... gi\|75259876, gi\|... - gi\|75259876\|ref\|ZP_00731154.1\| hypothetical protein EcolE2_01000272 [Escherichia coli E22], gi\|75259... gi\|75212393 - gi\|75212393\|ref\|ZP_00712417.1\| hypothetical protein EcolB_01000477 [Escherichia coli B171] gi\|218365654, gi... - gi\|218558885\|ref\|YP_002391798.1\| antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage ... gi\|218695629, gi... - gi\|218695629\|ref\|YP_002403296.1\| antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage ... gi\|187733038, gi... - gi\|187733038\|ref\|YP_001879776.1\| hypothetical protein SbBS512_E1127 [Shigella boydii CDC 3083-94], g... gi\|195183282, gi... - gi\|195183282\|dbj\|BAG66821.1\| conserved predicted protein [Escherichia coli O111:H-], gi\|195183174\|db... gi\|115513332, gi... - gi\|117624208\|ref\|YP_853121.1\| antitoxin of the YeeV-YeeU toxin-antitoxin system [Escherichia coli AP...	256.0	[0..1]	[122..1]
gi\|91075518, gi\|... - gi\|91213944\|ref\|YP_543930.1\| hypothetical protein UTI89_C4996 [Escherichia coli UTI89], gi\|91075518\|... gi\|110644740, gi... - gi\|110644740\|ref\|YP_672470.1\| hypothetical protein ECP_4633 [Escherichia coli 536], gi\|110346332\|gb\|... gi\|75242261 - gi\|75242261\|ref\|ZP_00726023.1\| hypothetical protein EcolF_01000716 [Escherichia coli F11] gi\|23954301 - gi\|23954301\|emb\|CAD42100.1\| hypothetical protein [Escherichia coli]	255.0	[0..1]	[121..1]
gi\|70608388 - gi\|70608388\|gb\|AAZ04460.1\| conserved hypothetical protein [Escherichia coli] gi\|237706322, gi... - gi\|237706322\|ref\|ZP_04536803.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|117625241, gi... - gi\|117625241\|ref\|YP_854324.1\| hypothetical protein APECO1_3487 [Escherichia coli APEC O1], gi\|115514...	254.0	[0..1]	[118..21]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTLPGTTL PDDNHDRPWW GLPCTVTPCF GARLVQEGNR LHYLADRAGI RGLFSDADAY  60
   61 HLDQAFPLLM KQLELMLTSG ELNPRHQHTV TLYAKGLTCK ADTLSSCDYV YLAVYPTPEM 120
  121 KN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.30103
Match:	2h28A
Description:	No description for 2h28A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits