YRC Public Data Repository - Protein Structure Prediction

Protein:	YEET_ECO57
Organism:	Escherichia coli O157:H7
Length:	73 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEET_ECO57.

Description	E-value	Query Range	Subject Range
gi\|26110824, gi\|... - gi\|26250394\|ref\|NP_756434.1\| hypothetical protein c4574 [Escherichia coli CFT073], gi\|26110824\|gb\|AA... gi\|253974786, gi... - gi\|254162885\|ref\|YP_003045993.1\| hypothetical protein ECB_02806 [Escherichia coli B str. REL606], gi...	147.0	[0..1]	[73..1]
gi\|170521888, gi... - gi\|170684170\|ref\|YP_001745193.1\| hypothetical protein EcSMS35_3210 [Escherichia coli SMS-3-5], gi\|17... gi\|13236681 - gi\|13236681\|gb\|AAK16199.1\| YeeT [Escherichia coli]	146.0	[0..1]	[73..1]
gi\|75212394, gi\|... - gi\|75212394\|ref\|ZP_00712418.1\| hypothetical protein EcolB_01000478 [Escherichia coli B171], gi\|75212... gi\|195183363, gi... - gi\|195183363\|dbj\|BAG66900.1\| predicted protein [Escherichia coli O111:H-], gi\|195183283\|dbj\|BAG66822... gi\|75229699, gi\|... - gi\|75229699\|ref\|ZP_00716232.1\| hypothetical protein EcolB7_01002071 [Escherichia coli B7A], gi\|19116... gi\|75189024, gi\|... - gi\|75189024\|ref\|ZP_00702291.1\| hypothetical protein EcolE_01002302 [Escherichia coli E24377A], gi\|15... gi\|218435044, gi... - gi\|218707947\|ref\|YP_002415466.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli U... gi\|192931327, gi... - gi\|75259060\|ref\|ZP_00730428.1\| hypothetical protein EcolE2_01001324 [Escherichia coli E22], gi\|19306... gi\|82779593, gi\|... - gi\|82779593\|ref\|YP_405942.1\| hypothetical protein SDY_4591 [Shigella dysenteriae Sd197], gi\|81243741... gi\|254692434 - gi\|254692434\|emb\|CAR48077.1\| hypothetical protein [Escherichia coli]	146.0	[0..1]	[73..1]
gi\|28316259 - gi\|28316259\|emb\|CAD66204.1\| hypothetical protein [Escherichia coli] gi\|110342133, gi... - gi\|110640541\|ref\|YP_668269.1\| hypothetical protein ECP_0336 [Escherichia coli 536], gi\|110342133\|gb\|... gi\|190908460, gi... - gi\|75241921\|ref\|ZP_00725740.1\| hypothetical protein EcolF_01001286 [Escherichia coli F11], gi\|191171...	146.0	[0..1]	[73..1]
gi\|218372473, gi... - gi\|218702487\|ref\|YP_002410116.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli I... gi\|23954300 - gi\|23954300\|emb\|CAD42099.1\| hypothetical protein [Escherichia coli] gi\|24114261, gi\|... - gi\|24114261\|ref\|NP_708771.1\| hypothetical protein SF2997 [Shigella flexneri 2a str. 301], gi\|2405341... gi\|30064314, gi\|... - gi\|30064314\|ref\|NP_838485.1\| hypothetical protein S3202 [Shigella flexneri 2a str. 2457T], gi\|300425... gi\|91075517, gi\|... - gi\|91213943\|ref\|YP_543929.1\| hypothetical protein UTI89_C4995 [Escherichia coli UTI89], gi\|91075517\|... gi\|110346331, gi... - gi\|110644739\|ref\|YP_672469.1\| hypothetical protein ECP_4632 [Escherichia coli 536], gi\|110346331\|gb\|... gi\|190909037, gi... - gi\|75242262\|ref\|ZP_00726024.1\| hypothetical protein EcolF_01000717 [Escherichia coli F11], gi\|191170... gi\|170518463, gi... - gi\|170680745\|ref\|YP_001746719.1\| hypothetical protein EcSMS35_4805 [Escherichia coli SMS-3-5], gi\|17... gi\|75187725, gi\|... - gi\|75187725\|ref\|ZP_00700992.1\| hypothetical protein EcolE_01000962 [Escherichia coli E24377A], gi\|15... gi\|218430098, gi... - gi\|218692534\|ref\|YP_002400746.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli E... gi\|218354815, gi... - gi\|218698083\|ref\|YP_002405750.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli 5... gi\|227837808, gi... - gi\|227885219\|ref\|ZP_04003024.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783780...	145.0	[0..1]	[73..1]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIITRGEAM RIHQQHPTSR LFPFCTGKYR WHGSAEAYTG REVQDIPGVL AVFAERRKDS  60
   61 FGPYVRLMSV TLN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	55.337242
Match:	PF06174.2
Description:	No description for PF06174.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.534	N/A	N/A	d.52.9	Description not found.
View	Download	0.428	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.414	N/A	N/A	d.52.8	Description not found.
View	Download	0.414	N/A	N/A	a.30.2	Homodimeric domain of signal transducing histidine kinase
View	Download	0.414	N/A	N/A	a.30.2	Homodimeric domain of signal transducing histidine kinase
View	Download	0.411	N/A	N/A	d.19.1	MHC antigen-recognition domain
View	Download	0.401	N/A	N/A	a.3.1	Cytochrome c
View	Download	0.397	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.389	N/A	N/A	a.36.1	Signal peptide-binding domain
View	Download	0.372	N/A	N/A	a.179.1	Replisome organizer (g39p helicase loader/inhibitor protein)
View	Download	0.308	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.274	N/A	N/A	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.255	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.240	N/A	N/A	d.50.1	dsRNA-binding domain-like
View	Download	0.239	N/A	N/A	d.58.4	Dimeric alpha+beta barrel

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits