YRC Public Data Repository - Protein Structure Prediction

Protein:	YEEN_ECOLI
Organism:	Escherichia coli
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEEN_ECOLI.

Description	E-value	Query Range	Subject Range
Y743_GEOMG - Probable transcriptional regulatory protein Gmet_0743 OS=Geobacter metallireducens (strain GS-15 / A...	342.0	[0..4]	[234..6]
Y1072_RUEPO - Probable transcriptional regulatory protein SPO1072 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 1... Y1072_SILPO - UPF0082 protein SPO1072 OS=Silicibacter pomeroyi GN=SPO1072 PE=3 SV=1	341.0	[0..4]	[234..6]
Y2326_GEODF - Probable transcriptional regulatory protein Geob_2326 OS=Geobacter daltonii (strain DSM 22248 / JCM ...	341.0	[0..4]	[234..6]
gi\|56380971, gi\|... - gi\|56421129\|ref\|YP_148447.1\| hypothetical protein GK2594 [Geobacillus kaustophilus HTA426], gi\|56380...	341.0	[0..4]	[235..12]
Y1220_METCA - UPF0082 protein MCA1220 OS=Methylococcus capsulatus GN=MCA1220 PE=3 SV=1 Y1220_METCA - Probable transcriptional regulatory protein MCA1220 OS=Methylococcus capsulatus (strain ATCC 33009 /...	341.0	[0..4]	[238..6]
Y2594_GEOKA - Probable transcriptional regulatory protein GK2594 OS=Geobacillus kaustophilus (strain HTA426) GN=GK... Y2594_GEOKA - UPF0082 protein GK2594 OS=Geobacillus kaustophilus GN=GK2594 PE=3 SV=2	340.0	[0..4]	[235..6]
YA74_GEOSL, Y107... - (P62036) Hypothetical UPF0082 protein GSU1074, UPF0082 protein GSU1074 OS=Geobacter sulfurreducens G... Y1074_GEOSL - Probable transcriptional regulatory protein GSU1074 OS=Geobacter sulfurreducens (strain ATCC 51573 /...	338.0	[0..4]	[234..6]
gi\|114762980, gi... - gi\|114762980\|ref\|ZP_01442410.1\| hypothetical protein R2601_20911 [Roseovarius sp. HTCC2601], gi\|1145...	338.0	[0..4]	[234..6]
Y4410_PSEPF - Probable transcriptional regulatory protein Pfl01_4410 OS=Pseudomonas fluorescens (strain Pf0-1) GN=...	337.0	[0..4]	[238..6]
Y733_LACAC - UPF0082 protein LBA0733 OS=Lactobacillus acidophilus GN=LBA0733 PE=3 SV=1 Y733_LACAC - Probable transcriptional regulatory protein LBA0733 OS=Lactobacillus acidophilus (strain ATCC 700396... gi\|227868498, gi... - gi\|227903611\|ref\|ZP_04021416.1\| protein of hypothetical function DUF28 [Lactobacillus acidophilus AT...	336.0	[0..4]	[237..6]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRKWANIVA KKTAKDGATS KIYAKFGVEI YAAAKQGEPD PELNTSLKFV IERAKQAQVP  60
   61 KHVIDKAIDK AKGGGDETFV QGRYEGFGPN GSMIIAETLT SNVNRTIANV RTIFNKKGGN 120
  121 IGAAGSVSYM FDNTGVIVFK GTDPDHIFEI LLEAEVDVRD VTEEEGNIVI YTEPTDLHKG 180
  181 IAALKAAGIT EFSTTELEMI AQSEVELSPE DLEIFEGLVD ALEDDDDVQK VYHNVANL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.69897
Match:	1konA
Description:	Hypothetical protein YebC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits