YRC Public Data Repository - Protein Structure Prediction

Protein:	YEDI_ECOLI
Organism:	Escherichia coli
Length:	305 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEDI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|170019710, gi... - gi\|170019710\|ref\|YP_001724664.1\| hypothetical protein EcolC_1685 [Escherichia coli ATCC 8739], gi\|16... gi\|117624096, gi... - gi\|117624096\|ref\|YP_853009.1\| hypothetical protein APECO1_995 [Escherichia coli APEC O1], gi\|1155132... gi\|218369467, gi... - gi\|218699481\|ref\|YP_002407110.1\| hypothetical protein ECIAI39_1098 [Escherichia coli IAI39], gi\|2183... gi\|218432548, gi... - gi\|218705451\|ref\|YP_002412970.1\| hypothetical protein ECUMN_2250 [Escherichia coli UMN026], gi\|21843... gi\|215265228, gi... - gi\|215487156\|ref\|YP_002329587.1\| hypothetical protein E2348C_2071 [Escherichia coli O127:H6 str. E23... gi\|91211177, gi\|... - gi\|91211177\|ref\|YP_541163.1\| hypothetical protein UTI89_C2159 [Escherichia coli UTI89], gi\|91072751\|... gi\|124498181, gi... - gi\|124532068\|ref\|ZP_01702082.1\| protein of unknown function DUF808 [Escherichia coli B], gi\|12449818... gi\|218558814, gi... - gi\|218558814\|ref\|YP_002391727.1\| hypothetical protein ECS88_2011 [Escherichia coli S88], gi\|21836558... gi\|75208269 - gi\|75208269\|ref\|ZP_00708626.1\| COG2354: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75227472, gi\|... - gi\|75227472\|ref\|ZP_00714239.1\| COG2354: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|82776355, gi\|... - gi\|82776355\|ref\|YP_402704.1\| hypothetical protein SDY_1048 [Shigella dysenteriae Sd197], gi\|81240503... gi\|75255234 - gi\|75255234\|ref\|ZP_00727082.1\| COG2354: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|74312497, gi\|... - gi\|74312497\|ref\|YP_310916.1\| hypothetical protein SSON_2015 [Shigella sonnei Ss046], gi\|73855974\|gb\|...	415.0	[0..1]	[305..1]
gi\|83569508 - gi\|83569508\|ref\|ZP_00920960.1\| COG2354: Uncharacterized protein conserved in bacteria [Shigella dyse...	414.0	[0..1]	[305..1]
gi\|218554538, gi... - gi\|218554538\|ref\|YP_002387451.1\| hypothetical protein ECIAI1_2039 [Escherichia coli IAI1], gi\|218361... gi\|218427517, gi... - gi\|218689953\|ref\|YP_002398165.1\| hypothetical protein ECED1_2225 [Escherichia coli ED1a], gi\|2184275... gi\|75196014, gi\|... - gi\|75196014\|ref\|ZP_00706084.1\| COG2354: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|157078748, gi... - gi\|75190975\|ref\|ZP_00704242.1\| COG2354: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|209919379, gi... - gi\|209919379\|ref\|YP_002293463.1\| hypothetical protein ECSE_2188 [Escherichia coli SE11], gi\|20991263... gi\|187430676, gi... - gi\|75175544\|ref\|ZP_00695760.1\| COG2354: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|194439578, gi... - gi\|83585008\|ref\|ZP_00923662.1\| COG2354: Uncharacterized protein conserved in bacteria [Escherichia c...	414.0	[0..1]	[305..1]
gi\|188495298, gi... - gi\|75511426\|ref\|ZP_00734101.1\| COG2354: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75215149 - gi\|75215149\|ref\|ZP_00713597.1\| COG2354: Uncharacterized protein conserved in bacteria [Escherichia c...	414.0	[0..1]	[305..1]
gi\|209766698, gi... - pir\|\|H90965 hypothetical protein ECs2696 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|195939264 - gi\|195939264\|ref\|ZP_03084646.1\| hypothetical protein EscherichcoliO157_23058 [Escherichia coli O157:... gi\|13362164, gi\|... - gi\|15831950\|ref\|NP_310723.1\| putative methyl-independent mismatch repair protein [Escherichia coli O... gi\|208810280, gi... - gi\|208810280\|ref\|ZP_03252156.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4206], gi... gi\|209157854, gi... - gi\|209396454\|ref\|YP_002271073.1\| hypothetical protein ECH74115_2735 [Escherichia coli O157:H7 str. E... gi\|217318360, gi... - gi\|217329013\|ref\|ZP_03445094.1\| putative membrane protein [Escherichia coli O157:H7 str. TW14588], g... gi\|188013900, gi... - gi\|188013900\|gb\|EDU52022.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|254593008, gi... - gi\|254793608\|ref\|YP_003078445.1\| conserved inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|188999321, gi... - gi\|188999321\|gb\|EDU68307.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|168789318, gi... - gi\|189371038\|gb\|EDU89454.1\| putative membrane protein [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|168801734, gi... - gi\|189376149\|gb\|EDU94565.1\| putative membrane protein [Escherichia coli O157:H7 str. EC508], gi\|1688... gi\|13362164, gi\|... - gi\|15831950\|ref\|NP_310723.1\| hypothetical protein ECs2696 [Escherichia coli O157:H7 str. Sakai], gi\|...	414.0	[0..1]	[305..1]
gi\|24052342, gi\|... - gi\|24113331\|ref\|NP_707841.1\| hypothetical protein SF2002 [Shigella flexneri 2a str. 301], gi\|2405234... gi\|26108633, gi\|... - gi\|26248229\|ref\|NP_754269.1\| hypothetical protein c2377 [Escherichia coli CFT073], gi\|26108633\|gb\|AA... gi\|110805924, gi... - gi\|110805924\|ref\|YP_689444.1\| hypothetical protein SFV_1999 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|227837187, gi... - gi\|227885614\|ref\|ZP_04003419.1\| conserved inner membrane protein [Escherichia coli 83972], gi\|227837... gi\|226900674, gi... - gi\|237705917\|ref\|ZP_04536398.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|110343655, gi... - gi\|110642063\|ref\|YP_669793.1\| hypothetical protein ECP_1891 [Escherichia coli 536], gi\|110343655\|gb\|... gi\|30041645, gi\|... - gi\|30063393\|ref\|NP_837564.1\| hypothetical protein S2097 [Shigella flexneri 2a str. 2457T], gi\|300416... gi\|191173322, gi... - gi\|75239149\|ref\|ZP_00723126.1\| COG2354: Uncharacterized protein conserved in bacteria [Escherichia c...	413.0	[0..1]	[305..1]
gi\|81244995, gi\|... - gi\|82543584\|ref\|YP_407531.1\| hypothetical protein SBO_1050 [Shigella boydii Sb227], gi\|81244995\|gb\|A...	412.0	[0..1]	[305..1]
gi\|25350878 - pir\|\|H85813 hypothetical protein yedI [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15802392, gi\|... - gi\|15802392\|ref\|NP_288418.1\| hypothetical protein Z3049 [Escherichia coli O157:H7 EDL933], gi\|125160...	412.0	[0..1]	[305..1]
gi\|56127356, gi\|... - gi\|56413099\|ref\|YP_150174.1\| hypothetical protein SPA0881 [Salmonella enterica subsp. enterica serov... gi\|197093502, gi... - gi\|197362025\|ref\|YP_002141662.1\| hypothetical protein SSPA0821 [Salmonella enterica subsp. enterica ...	405.0	[0..3]	[305..1]
gi\|16765325, gi\|... - gi\|16765325\|ref\|NP_460940.1\| hypothetical protein STM1989 [Salmonella typhimurium LT2], gi\|16420523\|... gi\|205328430, gi... - gi\|205328430\|gb\|EDZ15194.1\| inner membrane protein YedI [Salmonella enterica subsp. enterica serovar... lcl\|NC_016856.1_... - [gene=yedI] [protein=hypothetical protein] [protein_id=YP_005237958.1] [location=complement(2083287....	402.0	[0..3]	[305..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLAGSSLLT LLDDIATLLD DISVMGKLAA KKTAGVLGDD LSLNAQQVSG VRANRELPVV  60
   61 WGVAKGSLIN KVILVPLALI ISAFIPWAIT PLLMIGGAFL CFEGVEKVLH MLEAR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.538	N/A	N/A	a.8.2	Plasmid maintenance system epsilon/zeta, antidote epsilon subunit
View	Download	0.503	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.502	N/A	N/A	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.488	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.441	N/A	N/A	a.2.7	tRNA-binding arm

Predicted Domain #2

Region A:
Residues: [116-305]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHKEDPAQSQ QRLEKLAAQD PLKFEKDKIK GAIRTDFILS AEIVAITLGI VAEAPLLNQV  60
   61 LVLSGIALVV TVGVYGLVGV IVKIDDLGYW LAEKSSALMQ ALGKGLLIIA PWLMKALSIV 120
  121 GTLAMFLVGG GIVVHGIAPL HHAIEHFAGQ QSAVVAMILP TVLNLILGFI IGGIVVLGVK 180
  181 AVEKMRGQAH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits