YRC Public Data Repository - Protein Structure Prediction

Protein:	YEBV_ECOLI
Organism:	Escherichia coli
Length:	78 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEBV_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26248099, gi\|... - gi\|26248099\|ref\|NP_754139.1\| hypothetical protein c2245 [Escherichia coli CFT073], gi\|26108502\|gb\|AA... gi\|75239743 - gi\|75239743\|ref\|ZP_00723706.1\| hypothetical protein EcolF_01002941 [Escherichia coli F11] gi\|24112774, gi\|... - ref\|NP_707284.1\| hypothetical protein SF1389 [Shigella flexneri 2a str. 301], gb\|AAN42991.1\| orf, c... gi\|75511131 - gi\|75511131\|ref\|ZP_00733854.1\| hypothetical protein Ecol5_01004542 [Escherichia coli 53638] gi\|49176158, gi\|... - gi\|49176158\|ref\|NP_416350.3\| unknown CDS [Escherichia coli K12], gb\|AAC74906.1\| orf, hypothetical pr... gi\|81241377, gi\|... - gi\|82777229\|ref\|YP_403578.1\| hypothetical protein SDY_1987 [Shigella dysenteriae Sd197], gi\|81241377... gi\|15831800, gi\|... - gi\|15831800\|ref\|NP_310573.1\| hypothetical protein ECs2546 [Escherichia coli O157:H7], gi\|13362014\|db... gi\|82543760, gi\|... - gi\|82543760\|ref\|YP_407707.1\| hypothetical protein SBO_1251 [Shigella boydii Sb227], gi\|81245171\|gb\|A... gi\|15802249, gi\|... - gi\|15802249\|ref\|NP_288273.1\| hypothetical protein Z2883 [Escherichia coli O157:H7 EDL933], gi\|125158... gi\|83585563 - gi\|83585563\|ref\|ZP_00924207.1\| hypothetical protein Ecol1_01003293 [Escherichia coli 101-1] gi\|75190865 - gi\|75190865\|ref\|ZP_00704132.1\| hypothetical protein EcolE_01004178 [Escherichia coli E24377A] gi\|75209118 - gi\|75209118\|ref\|ZP_00709373.1\| hypothetical protein EcolB_01003724 [Escherichia coli B171] gi\|75228310 - gi\|75228310\|ref\|ZP_00714962.1\| hypothetical protein EcolB7_01003388 [Escherichia coli B7A] gi\|75235360 - gi\|75235360\|ref\|ZP_00719586.1\| hypothetical protein EcolE1_01002913 [Escherichia coli E110019] gi\|91072632, gi\|... - gi\|91211058\|ref\|YP_541044.1\| hypothetical protein UTI89_C2037 [Escherichia coli UTI89], gi\|91072632\|... gi\|15831800, gi\|... - gi\|15831800\|ref\|NP_310573.1\| hypothetical protein ECs2546 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|209767722, gi... - pir\|\|D64945 hypothetical protein b1836 - Escherichia coli (strain K-12), pir\|\|F85795 hypothetical p... gi\|209919202, gi... - gi\|209919202\|ref\|YP_002293286.1\| hypothetical protein ECSE_2011 [Escherichia coli SE11], gi\|20991246... gi\|237705788, gi... - gi\|237705788\|ref\|ZP_04536269.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|227837310, gi... - gi\|227885737\|ref\|ZP_04003542.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783731...	154.0	[0..1]	[78..6]
gi\|75195901 - gi\|75195901\|ref\|ZP_00705971.1\| hypothetical protein EcolH_01001704 [Escherichia coli HS]	154.0	[0..1]	[78..6]
gi\|16420384, gi\|... - gi\|16765192\|ref\|NP_460807.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16420384\|... gi\|207856643, gi... - gi\|207856643\|ref\|YP_002243294.1\| hypothetical protein SEN1186 [Salmonella enterica subsp. enterica s... gi\|198244523, gi... - gi\|198244523\|ref\|YP_002215289.1\| hypothetical protein SeD_A1463 [Salmonella enterica subsp. enterica... gi\|205272267, gi... - gi\|205352486\|ref\|YP_002226287.1\| hypothetical protein SG1265 [Salmonella enterica subsp. enterica se... gi\|197214181, gi... - gi\|197250478\|ref\|YP_002146174.1\| hypothetical protein SeAg_B1280 [Salmonella enterica subsp. enteric... gi\|197243937, gi... - gi\|197265682\|ref\|ZP_03165756.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|195634271, gi... - gi\|195634271\|gb\|EDX52623.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|194407496, gi... - gi\|194449192\|ref\|YP_002045897.1\| hypothetical protein SeHA_C2053 [Salmonella enterica subsp. enteric... gi\|167993805, gi... - gi\|205328188\|gb\|EDZ14952.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,... lcl\|NC_016856.1_... - [gene=STM14_2239] [protein=putative cytoplasmic protein] [protein_id=YP_005237798.1] [location=19615... gi\|205339443, gi... - gi\|205339443\|gb\|EDZ26207.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... gi\|161362997, gi... - gi\|161613633\|ref\|YP_001587598.1\| hypothetical protein SPAB_01357 [Salmonella enterica subsp. enteric...	153.0	[0..1]	[78..2]
gi\|213973528 - gi\|213973528\|ref\|ZP_03400787.1\| hypothetical protein Salmonellaentericaenterica_02171 [Salmonella en... gi\|214001560 - gi\|214001560\|ref\|ZP_03412295.1\| hypothetical protein Salmonellentericaenterica_14317 [Salmonella ent... gi\|213424192 - gi\|213424192\|ref\|ZP_03357057.1\| hypothetical protein SentesTyphi_00415 [Salmonella enterica subsp. e... gi\|213585492 - gi\|213585492\|ref\|ZP_03367318.1\| hypothetical protein SentesTyph_31210 [Salmonella enterica subsp. en... gi\|213609704 - gi\|213609704\|ref\|ZP_03369530.1\| hypothetical protein SentesTyp_03915 [Salmonella enterica subsp. ent... gi\|213857568 - gi\|213857568\|ref\|ZP_03384539.1\| hypothetical protein SentesT_20706 [Salmonella enterica subsp. enter... gi\|200390629, gi... - gi\|200390629\|ref\|ZP_03217240.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|204320039, gi... - gi\|204930995\|ref\|ZP_03221821.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|213161346 - gi\|213161346\|ref\|ZP_03347056.1\| hypothetical protein Salmoneentericaenterica_15477 [Salmonella enter... gi\|213419896 - gi\|213419896\|ref\|ZP_03352962.1\| hypothetical protein Salmonentericaenterica_19840 [Salmonella enteri... gi\|194443607, gi... - gi\|194443607\|ref\|YP_002041105.1\| hypothetical protein SNSL254_A1990 [Salmonella enterica subsp. ente... gi\|194457683, gi... - gi\|194471319\|ref\|ZP_03077303.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|62128050, gi\|... - gi\|62180417\|ref\|YP_216834.1\| hypothetical protein SC1847 [Salmonella enterica subsp. enterica serova... gi\|194733927, gi... - gi\|194733927\|ref\|YP_002114883.1\| hypothetical protein SeSA_A1994 [Salmonella enterica subsp. enteric... gi\|56127488, gi\|... - gi\|56413231\|ref\|YP_150306.1\| hypothetical protein SPA1022 [Salmonella enterica subsp. enterica serov... gi\|197093633, gi... - gi\|197362156\|ref\|YP_002141793.1\| hypothetical protein SSPA0953 [Salmonella enterica subsp. enterica ... gi\|238912084 - gi\|238912084\|ref\|ZP_04655921.1\| hypothetical protein SentesTe_13261 [Salmonella enterica subsp. ente... gi\|16503036, gi\|... - gi\|25512040\|pir\|\|AC0729 conserved hypothetical protein STY1982 [imported] - Salmonella enterica subs... gi\|29141503, gi\|... - gi\|29141503\|ref\|NP_804845.1\| hypothetical protein t1027 [Salmonella enterica subsp. enterica serovar... gi\|16760739 - gi\|16760739\|ref\|NP_456356.1\| hypothetical protein STY1982 [Salmonella enterica subsp. enterica serov... gi\|168234499, gi... - gi\|205331589\|gb\|EDZ18353.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ke... gi\|197288703, gi... - gi\|197288703\|gb\|EDY28078.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|168259903, gi... - gi\|205350959\|gb\|EDZ37590.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ha... gi\|205342734, gi... - gi\|205342734\|gb\|EDZ29498.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|160864373, gi... - gi\|161503026\|ref\|YP_001570138.1\| hypothetical protein SARI_01090 [Salmonella enterica subsp. arizona... gi\|205322111, gi... - gi\|205322111\|gb\|EDZ09950.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sa...	153.0	[0..1]	[78..2]
gi\|75255851 - gi\|75255851\|ref\|ZP_00727590.1\| hypothetical protein EcolE2_01004118 [Escherichia coli E22]	151.0	[0..1]	[78..6]
gi\|75175665 - gi\|75175665\|ref\|ZP_00695871.1\| hypothetical protein SboyB_01004261 [Shigella boydii BS512]	150.0	[0..1]	[78..6]
gi\|77980092, gi\|... - gi\|77980092\|ref\|ZP_00835507.1\| hypothetical protein YintA_01000141 [Yersinia intermedia ATCC 29909],...	144.0	[0..2]	[77..3]
gi\|77975200 - gi\|77975200\|ref\|ZP_00830736.1\| hypothetical protein YfreA_01000821 [Yersinia frederiksenii ATCC 3364...	143.0	[0..2]	[77..3]
gi\|218928822, gi... - gi\|218928822\|ref\|YP_002346697.1\| hypothetical protein YPO1694 [Yersinia pestis CO92], gi\|16121954\|re... gi\|167422612, gi... - gi\|167422612\|ref\|ZP_02314365.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|51589992, gi\|... - gi\|51596710\|ref\|YP_070901.1\| hypothetical protein YPTB2387 [Yersinia pseudotuberculosis IP 32953], g... gi\|167048851, gi... - gi\|167401746\|ref\|ZP_02307237.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167468747 - gi\|167468747\|ref\|ZP_02333451.1\| hypothetical protein YpesF_12794 [Yersinia pestis FV-1] gi\|167054237, gi... - gi\|167426784\|ref\|ZP_02318537.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|186895768, gi... - gi\|186895768\|ref\|YP_001872880.1\| hypothetical protein YPTS_2462 [Yersinia pseudotuberculosis PB1/+],... gi\|229689415, gi... - gi\|229843807\|ref\|ZP_04463950.1\| hypothetical protein YPF_2203 [Yersinia pestis biovar Orientalis str... gi\|229702411, gi... - gi\|229894656\|ref\|ZP_04509837.1\| hypothetical protein YPS_2432 [Yersinia pestis Pestoides A], gi\|2297... gi\|229693403, gi... - gi\|229897066\|ref\|ZP_04512222.1\| hypothetical protein YPH_4081 [Yersinia pestis biovar Orientalis str... gi\|149290725, gi... - gi\|149366351\|ref\|ZP_01888385.1\| hypothetical protein YPE_1568 [Yersinia pestis CA88-4125], gi\|149290... gi\|165913634, gi... - gi\|89102893\|ref\|ZP_01175497.1\| COG1855: ATPase (PilT family) [Yersinia pestis biovar Orientalis str.... gi\|145210732, gi... - gi\|145599036\|ref\|YP_001163112.1\| hypothetical protein YPDSF_1754 [Yersinia pestis Pestoides F], gi\|1... gi\|165925552, gi... - gi\|165925552\|ref\|ZP_02221384.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|108779735, gi... - gi\|108807822\|ref\|YP_651738.1\| hypothetical protein YPA_1827 [Yersinia pestis Antiqua], gi\|108779735\|... gi\|108775746, gi... - gi\|229902418\|ref\|ZP_04517537.1\| hypothetical protein YP516_2155 [Yersinia pestis Nepal516], gi\|22968... gi\|166210458, gi... - gi\|166210458\|ref\|ZP_02236493.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165992609, gi... - gi\|166008227\|ref\|ZP_02229125.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... Q669U6\|Q669U6_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|25510358 - pir\|\|AF0206 conserved hypothetical protein YPO1694 [imported] - Yersinia pestis (strain CO92) gi\|162420031, gi... - gi\|77635512\|ref\|ZP_00797595.1\| COG1855: ATPase (PilT family) [Yersinia pestis Angola], gi\|162420031\|... gi\|45436392, gi\|... - gi\|45441531\|ref\|NP_993070.1\| hypothetical protein YP_1719 [Yersinia pestis biovar Microtus str. 9100... gi\|117673318, gi... - gi\|77629456\|ref\|ZP_00792042.1\| COG1855: ATPase (PilT family) [Yersinia pseudotuberculosis IP 31758],... gi\|22125749, gi\|... - gi\|22125749\|ref\|NP_669172.1\| hypothetical protein y1856 [Yersinia pestis KIM], gi\|21958670\|gb\|AAM854...	142.0	[0..2]	[77..3]
gi\|238717993, gi... - gi\|77961588\|ref\|ZP_00825422.1\| hypothetical protein YmolA_01002168 [Yersinia mollaretii ATCC 43969],...	142.0	[0..1]	[77..2]

Back

Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTSVRIGAF EIDDGELHGE SPGDRTLTIP CKSDPDLCMQ LDAWDAETSI PALLNGEHSV  60
   61 LYRTRYDQQS DAWIMRLA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	67.823909
Match:	PF07351.4
Description:	No description for PF07351.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits