YRC Public Data Repository - Protein Structure Prediction

Protein:	YDJJ_ECOLI
Organism:	Escherichia coli
Length:	347 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDJJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238727202, gi... - gi\|77978816\|ref\|ZP_00834240.1\| COG1062: Zn-dependent alcohol dehydrogenases, class III [Yersinia int...	324.0	[0..1]	[346..4]
gi\|238715026, gi... - gi\|77958654\|ref\|ZP_00822684.1\| COG1062: Zn-dependent alcohol dehydrogenases, class III [Yersinia ber...	323.0	[0..1]	[345..4]
gi\|157278309, gi... - gi\|42412381\|gb\|AAS15570.1\| class III alcohol dehydrogenase [Oryzias latipes], gi\|157278309\|ref\|NP_00...	322.0	[0..1]	[346..8]
gi\|83845254, gi\|... - gi\|83944007\|ref\|ZP_00956464.1\| zinc-binding dehydrogenase [Sulfitobacter sp. EE-36], gi\|83845254\|gb\|...	322.0	[0..1]	[347..5]
gi\|166211733, gi... - gi\|166211733\|ref\|ZP_02237768.1\| S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydro... gi\|170024796, gi... - gi\|170024796\|ref\|YP_001721301.1\| S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydr... gi\|229703701, gi... - gi\|229894303\|ref\|ZP_04509486.1\| Alcohol dehydrogenase class III;Glutathione-dependent formaldehyde d... gi\|186894941, gi... - gi\|186894941\|ref\|YP_001872053.1\| S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydr... Q66C89\|Q66C89_YERPS - Probable alcohol dehydrogenase / formaldehyde dehydrogenase - Yersinia pseudotuberculosis gi\|162351589, gi... - gi\|77635264\|ref\|ZP_00797351.1\| COG1062: Zn-dependent alcohol dehydrogenases, class III [Yersinia pes... gi\|153947808, gi... - gi\|77628736\|ref\|ZP_00791322.1\| COG1062: Zn-dependent alcohol dehydrogenases, class III [Yersinia pse... gi\|51595854, gi\|... - gi\|51595854\|ref\|YP_070045.1\| alcohol dehydrogenase/formaldehyde dehydrogenase [Yersinia pseudotuberc... gi\|145598759, gi... - gi\|145598759\|ref\|YP_001162835.1\| alcohol dehydrogenase [Yersinia pestis Pestoides F], gi\|145210455\|g... gi\|45436077, gi\|... - gi\|45441217\|ref\|NP_992756.1\| alcohol dehydrogenase [Yersinia pestis biovar Microtus str. 91001], gi\|...	320.0	[0..1]	[346..4]
gi\|238788842, gi... - gi\|77973854\|ref\|ZP_00829398.1\| COG1062: Zn-dependent alcohol dehydrogenases, class III [Yersinia fre...	319.0	[0..1]	[345..4]
gi\|77961154, gi\|... - gi\|77961154\|ref\|ZP_00824999.1\| COG1062: Zn-dependent alcohol dehydrogenases, class III [Yersinia mol...	319.0	[0..1]	[345..4]
gi\|54308673, gi\|... - gi\|54308673\|ref\|YP_129693.1\| putative alcohol dehydrogenase class III [Photobacterium profundum SS9]...	319.0	[0..1]	[346..6]
gi\|119865736, gi... - gi\|119947132\|ref\|YP_944812.1\| alcohol dehydrogenase [Psychromonas ingrahamii 37], gi\|119865736\|gb\|AB...	318.0	[0..1]	[346..6]
gi\|160861160, gi... - gi\|160875638\|ref\|YP_001554954.1\| S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydr... gi\|68542288, gi\|... - gi\|68542288\|ref\|ZP_00582021.1\| Zinc-containing alcohol dehydrogenase superfamily [Shewanella baltica... gi\|77816052, gi\|... - gi\|77816052\|ref\|ZP_00815261.1\| Zinc-containing alcohol dehydrogenase superfamily [Shewanella putrefa... gi\|153000927, gi... - gi\|153000927\|ref\|YP_001366608.1\| S-(hydroxymethyl)glutathione dehydrogenase [Shewanella baltica OS18... gi\|146863790, gi... - gi\|217973117\|ref\|YP_002357868.1\| S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydr...	318.0	[0..1]	[345..9]

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Predicted Domain #1

Region A:
Residues: [1-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNSKAILQV PGTMKIISAE IPVPKEDEVL IKVEYVGICG SDVHGFESGP FIPPKDPNQE  60
   61 IGLGHECAGT VVAVGSRVRK FKPGDRVNIE PGVPCGHCRY CLEGKYNICP DVDFMATQPN 120
  121 YRGALTHYLC HPESFTYKLP DNMDTMEGAL VEPAAVGMHA AMLADVKPGK KIIILGAGCI 180
  181 GLMTLQACKC LGATEIAVVD VLEKRLAMAE QLGATVVING AKEDTIARCQ QFTEDMGADI 240
  241 VFETAGSAVT VKQAPYLVMR GGKIMIVGTV PGDSAINFLK INREVTIQTV FRYANRYPVT 300
  301 IEAISSGRFD VKSMVTHIYD YRDVQQAFEE SVNNKRDIIK GVIKISD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.522879
Match:	1e3jA
Description:	Ketose reductase (sorbitol dehydrogenase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits